Description Usage Arguments Details Value Author(s) References See Also Examples
Histogram of p-values
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x |
A q-value object. |
... |
Additional arguments, currently unused. |
This function allows one to view a histogram of the p-values along with line plots of the q-values and local FDR values versus p-values. The pi_0 estimate is also displayed.
Nothing of interest.
Andrew J. Bass
Storey JD. (2002) A direct approach to false discovery rates. Journal
of the Royal Statistical Society, Series B, 64: 479-498.
http://onlinelibrary.wiley.com/doi/10.1111/1467-9868.00346/abstract
Storey JD and Tibshirani R. (2003) Statistical significance for
genome-wide experiments. Proceedings of the National Academy of Sciences,
100: 9440-9445.
http://www.pnas.org/content/100/16/9440.full
Storey JD. (2003) The positive false discovery rate: A Bayesian
interpretation and the q-value. Annals of Statistics, 31: 2013-2035.
http://projecteuclid.org/DPubS/Repository/1.0/Disseminate?view=body&id=pdf_1&handle=euclid.aos/1074290335
conservative point estimation, and simultaneous conservative
consistency of false discovery rates: A unified approach. Journal of
the Royal Statistical Society, Series B, 66: 187-205.
http://onlinelibrary.wiley.com/doi/10.1111/j.1467-9868.2004.00439.x/abstract
Storey JD. (2011) False discovery rates. In International Encyclopedia of Statistical Science.
http://genomine.org/papers/Storey_FDR_2011.pdf
http://www.springer.com/statistics/book/978-3-642-04897-5
qvalue
, plot.qvalue
, summary.qvalue
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