inst/doc/rSWeeP.R

In rSWeeP: Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences

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library(rSWeeP)
baseMatrix <- orthBase(160000,10)

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path <- system.file(package = "rSWeeP", "extdata", "exdna.fas")

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return <- sWeeP(path,baseMatrix)
distancia <- dist(return, method = "euclidean")
tree <- hclust(distancia, method="ward.D")
plot(tree, hang = -1, cex = 1)

## ----label='Session information', eval=TRUE, echo=FALSE-----------------------
sessionInfo()