sracipeCircuit-set: Initialize the circuit

Description Usage Arguments Value Related Functions Examples

Description

Initialize the circuit from a topology file or a data.frame A typical topology file looks like

Source Target Type
geneA geneB 2
geneB geneC 1
geneB geneA 2

Here the regulation type is specified by number - activation: 1, inhibition: 2

Usage

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sracipeCircuit(.object) <- value

## S4 replacement method for signature 'RacipeSE'
sracipeCircuit(.object) <- value

Arguments

.object

RacipeSE object

value

data.frame containing the circuit information

Value

data.frame

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeOverExp, sracipePlotData

Examples

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RacipeSet <- RacipeSE()
data("demoCircuit")
sracipeCircuit(RacipeSet) <- demoCircuit
sracipeCircuit(RacipeSet)
rm(RacipeSet, demoCircuit)

sRACIPE documentation built on Nov. 8, 2020, 6:54 p.m.