Files in sRAP
Simplified RNA-Seq Analysis Pipeline
CHANGES
NAMESPACE
DESCRIPTION
build/vignette.rds
data/bdfunc.enrichment.mouse.rda
data/datalist
data/bdfunc.enrichment.human.rda
R/RNA.norm.R
R/RNA.qc.R
R/RNA.prepare.input.R
R/RNA.bdfunc.R
R/RNA.deg.R
vignettes/MiSeq_pca.pdf
vignettes/GLI1_UP_V1_fc.pdf
vignettes/sRAP.Rnw
vignettes/sRAP_Workflow.pdf
vignettes/sRAP.bib
vignettes/MiSeq_heatmap.pdf
vignettes/MiSeq_box_plot.pdf
vignettes/MiSeq_hist.pdf
vignettes/MiSeq_cluster.pdf
vignettes/MiSeq_TGFB1_box_plot.pdf
vignettes/Thumbs.db
vignettes/GLI1_UP_V1_signal.pdf
man/RNA.bdfunc.fc.Rd
man/RNA.norm.Rd
man/bdfunc.enrichment.mouse.Rd
man/RNA.bdfunc.signal.Rd
man/RNA.prepare.input.Rd
man/RNA.qc.Rd
man/bdfunc.enrichment.human.Rd
man/RNA.deg.Rd
inst/CITATION
inst/doc/sRAP.pdf
inst/doc/sRAP.Rnw
inst/doc/sRAP.R
inst/extdata/MiSeq_Sample_Description.txt
inst/extdata/MiSeq_cufflinks_genes_truncate.txt
inst/extdata/cufflinks/SRR493374_truncated.fpkm_tracking
inst/extdata/cufflinks/SRR493377_truncated.fpkm_tracking
inst/extdata/cufflinks/SRR493373_truncated.fpkm_tracking
inst/extdata/cufflinks/SRR493372_truncated.fpkm_tracking
inst/extdata/cufflinks/SRR493375_truncated.fpkm_tracking
inst/extdata/cufflinks/SRR493376_truncated.fpkm_tracking
inst/Perl/tabulate_RPKM.pl
