bdfunc.enrichment.mouse: BD-Func Enrichment File for Mouse Gene Symbols

Description Usage Source References

Description

Contains genes lists of paired up-regulated and down-regulated genes. Gene Lists come from Gene Ontology (GO [1]).

BD-Func [2] will compare the expression patterns for the up-regulated genes to the down-regulated genes.

Usage

1

Source

GO Gene Lists: http://www.geneontology.org/GO.downloads.annotations.shtml

References

[1] Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, and Sherlock G.(2000). Gene Ontology: tool for the unification of biology Nat Genet, 25:25-29

[2] Warden CD, Kanaya N, Chen S, and Yuan Y-C. (2013). BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. peerJ, 1:e159


sRAP documentation built on Nov. 1, 2018, 2:42 a.m.