bdfunc.enrichment.mouse: BD-Func Enrichment File for Mouse Gene Symbols
In sRAP: Simplified RNA-Seq Analysis Pipeline
Description
Usage
Source
References
Description
Contains genes lists of paired up-regulated and down-regulated genes. Gene Lists come from Gene Ontology (GO [1]).
BD-Func [2] will compare the expression patterns for the up-regulated genes to the down-regulated genes.
Usage
1
Source
GO Gene Lists: http://www.geneontology.org/GO.downloads.annotations.shtml
References
[1] Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM,
Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L,
Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM,
and Sherlock G.(2000).
Gene Ontology: tool for the unification of biology
Nat Genet,
25:25-29
[2] Warden CD, Kanaya N, Chen S, and Yuan Y-C. (2013).
BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways.
peerJ,
1:e159
sRAP documentation built on April 28, 2020, 9:11 p.m.
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Description Usage Source References
Description
Contains genes lists of paired up-regulated and down-regulated genes. Gene Lists come from Gene Ontology (GO [1]).
BD-Func [2] will compare the expression patterns for the up-regulated genes to the down-regulated genes.
Usage
1 |
Source
GO Gene Lists: http://www.geneontology.org/GO.downloads.annotations.shtml
References
[1] Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, and Sherlock G.(2000). Gene Ontology: tool for the unification of biology Nat Genet, 25:25-29
[2] Warden CD, Kanaya N, Chen S, and Yuan Y-C. (2013). BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. peerJ, 1:e159
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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