scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Getting started

Package details

AuthorFrancesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]
Bioconductor views SingleCell Software
MaintainerMichele Ceccarelli <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the scTHI package in your browser

Any scripts or data that you put into this service are public.

scTHI documentation built on Nov. 8, 2020, 7:37 p.m.