API for scde
Single Cell Differential Expression

Global functions
FLXMRglmC Source code
FLXMRglmCf Source code
FLXMRnb2glm Source code
FLXMRnb2glmC Source code
FLXMRnb2gth Source code
FLXMRnb2gthC Source code
FLXPmultinomW Source code
ViewPagodaApp Man page
ViewPagodaApp-class Man page
bh.adjust Source code
bwpca Man page Source code
c.view.pathways Source code
calculate.batch.joint.posterior.matrix Source code
calculate.crossfit.models Source code
calculate.failure.lfpm.p Source code
calculate.failure.p Source code
calculate.go.enrichment Source code
calculate.individual.models Source code
calculate.joint.posterior.matrix Source code
calculate.posterior.matrices Source code
calculate.ratio.posterior Source code
clean.counts Man page Source code
clean.gos Man page Source code
col2hex Source code
collapse.aspect.clusters Source code
custom.glm.fit Source code
es.mef.small Man page
estimate.library.sizes Source code
estimate.signal.prior Source code
fit.nb2.mixture.model Source code
fit.nb2gth.mixture.model Source code
get.component.model.lik Source code
get.component.model.loglik Source code
get.compressed.v1.model Source code
get.compressed.v1.models Source code
get.concomitant.prob Source code
get.corr.theta Source code
get.exp.logposterior.matrix Source code
get.exp.posterior.matrix Source code
get.exp.posterior.samples Source code
get.exp.sample Source code
get.fpm.estimates Source code
get.ratio.posterior.Z.score Source code
get.rep.set.general.model.logposteriors Source code
get.rep.set.general.model.posteriors Source code
get.rep.set.posteriors Source code
get.scde.server Source code
gev.t Source code
glm.nb.fit Source code
jpmatLogBatchBoot Source code
jpmatLogBoot Source code
knn Man page
knn.error.models Man page Source code
log.row.sums Source code
make.pagoda.app Man page Source code
matSlideMult Source code
mc.stepFlexmix Source code
my.heatmap2 Source code
negbin.th Source code
o.ifm Man page
onAttach Source code
onUnload Source code
one.sided.test.id Source code
pagoda.cluster.cells Man page Source code
pagoda.effective.cells Man page Source code
pagoda.gene.clusters Man page Source code
pagoda.pathway.wPCA Man page Source code
pagoda.reduce.loading.redundancy Man page Source code
pagoda.reduce.redundancy Man page Source code
pagoda.show.pathways Man page Source code
pagoda.subtract.aspect Man page Source code
pagoda.top.aspects Man page Source code
pagoda.varnorm Man page Source code
pagoda.view.aspects Man page Source code
pairs.extended Source code
pairs.panel.cor Source code
pairs.panel.hist Source code
pairs.panel.scatter Source code
pairs.panel.smoothScatter Source code
papply Man page Source code
pathway.pc.correlation.distance Source code
pgev.upper.log Source code
plot.nb2.mixture.fit Source code
pollen Man page
quick.distribution.summary Source code
sample.posterior Source code
scde Man page
scde-package Man page
scde.browse.diffexp Man page Source code
scde.edff Man page
scde.error.models Man page Source code
scde.expression.difference Man page Source code
scde.expression.magnitude Man page Source code
scde.expression.prior Man page Source code
scde.failure.probability Man page Source code
scde.fit.models.to.reference Man page Source code
scde.posteriors Man page Source code
scde.test.gene.expression.difference Man page Source code
show.app Man page Source code
sn Source code
t.view.pathways Source code
view.aspects Man page Source code
weighted.median.scde Source code
weightedMatCenter Source code
weightedMatVar Source code
winsorize.matrix Man page Source code
scde documentation built on May 2, 2018, 2:08 a.m.