Files in seq2pathway
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/GRanges_demo.rda
data/Chipseq_Peak_demo.rda
data/dat_chip.rda
data/datalist
data/dat_RNA.rda
R/seq2pathway2020.r
extexample/Chipseq_peak_annotation.txt
vignettes/Fig8_gene2pathway_flowchart_xy.png
vignettes/Fig6_type_xy.png
vignettes/Fig5_PeakMtoStart_V4.png
vignettes/Fig2_pseudo_scripts_bin_07102014_xy_v2.png
vignettes/Fig4_promoter_radius.jpg
vignettes/Fig7_BidirectionalRegion.jpg
vignettes/Fig1_seq2gene.png
vignettes/Fig9_Fisher_v2.png
vignettes/Fig3_search_radius_xy.png
vignettes/.RData
vignettes/seq2pathwaypackage.Rnw
man/dat_chip.rd
man/plotTop10.Rd
man/Chipseq_Peak_demo.Rd
man/FisherTest_MsigDB.Rd
man/gene2pathway_test.Rd
man/runseq2pathway.Rd
man/GRanges_demo.Rd
man/FisherTest_GO_BP_MF_CC.Rd
man/addDescription.Rd
man/runseq2gene.Rd
man/dat_RNA.rd
inst/NEWS
inst/CITATION
inst/seq2pathwaypackage.pdf
inst/doc/seq2pathwaypackage.R
inst/doc/seq2pathwaypackage.pdf
inst/doc/seq2pathwaypackage.Rnw
inst/scripts/Function_PeakMutationAnnotation_GENCODE_08182020.py
inst/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
inst/extexample/Chipseq_peak_annotation.txt
