Files in seq2pathway
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data

NAMESPACE
DESCRIPTION
inst/NEWS
inst/seq2pathwaypackage.pdf
inst/CITATION
inst/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
inst/doc/seq2pathwaypackage.pdf
inst/doc/seq2pathwaypackage.Rnw
inst/doc/seq2pathwaypackage.R
inst/extexample/Chipseq_peak_annotation.txt
R/seq2pathway-internal.r
vignettes/Fig9_Fisher_v2.png
vignettes/Fig1_seq2gene.png
vignettes/Fig7_BidirectionalRegion.jpg
vignettes/Fig3_search_radius_xy.png
vignettes/Fig2_pseudo_scripts_bin_07102014_xy_v2.png
vignettes/Fig8_gene2pathway_flowchart_xy.png
vignettes/seq2pathwaypackage.Rnw
vignettes/Fig6_type_xy.png
vignettes/Fig4_promoter_radius.jpg
vignettes/Fig5_PeakMtoStart_V4.png
man/Chipseq_Peak_demo.Rd man/runseq2pathway.Rd man/dat_RNA.rd man/GRanges_demo.Rd man/gene2pathway_test.Rd man/runseq2gene.Rd man/dat_chip.rd man/FisherTest_MsigDB.Rd man/addDescription.Rd man/FisherTest_GO_BP_MF_CC.Rd
data/dat_chip.rda
data/Chipseq_Peak_demo.rda
data/datalist
data/dat_RNA.rda
data/GRanges_demo.rda
build/vignette.rds
seq2pathway documentation built on Nov. 17, 2017, 9:15 a.m.