shinyTANDEM: Provides a GUI for rTANDEM
Version 1.14.0

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Browse man pages Browse package API and functions Browse package files

AuthorFrederic Fournier <frederic.fournier@crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>
Bioconductor views MassSpectrometry Proteomics
Date of publicationNone
MaintainerFrederic Fournier <frederic.fournier@crchuq.ulaval.ca>
LicenseGPL-3
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")

Getting started

Man pages

shinyTANDEM: Launch a shiny GUI for rTANDEM

Functions

analysis.ui Source code
biomart.ui Source code
convert.ui Source code
external.ui Source code
gominer.ui Source code
home.ui Source code
launch.ui Source code
load.ui Source code
navSection Source code
overview.ui Source code
param.ui Source code
peps.ui Source code
progressInit Source code
prots.ui Source code
shinyTANDEM Man page Source code
shinyTandemServer Source code
shinyUI Source code
stats.ui Source code
tableAsHTML Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/global.R
R/pagedUI.R
R/server.R
R/shinyTANDEM.R
R/stats.R
R/ui.R
README
build
build/vignette.rds
inst
inst/doc
inst/doc/shinyTANDEM.Rnw
inst/doc/shinyTANDEM.pdf
inst/extdata
inst/extdata/result.RDS
inst/extdata/result.xml
inst/extdata/www
inst/extdata/www/css
inst/extdata/www/css/bootstrap-fileupload.css
inst/extdata/www/css/bootstrap-fileupload.min.css
inst/extdata/www/css/progress.css
inst/extdata/www/images
inst/extdata/www/images/rTANDEM_logo.png
inst/extdata/www/js
inst/extdata/www/js/bootstrap-fileupload.js
inst/extdata/www/js/bootstrap-fileupload.min.js
inst/extdata/www/js/navbar.js
inst/extdata/www/js/progress.js
inst/extdata/www/js/tooltips.js
inst/extdata/www/navbar.html
man
man/shinyTANDEM.Rd
vignettes
vignettes/shinyTANDEM.Rnw
shinyTANDEM documentation built on May 20, 2017, 10:50 p.m.