getBarcodes: Get barcodes from idat file names
In skewr: Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
A convenience function for retrieving simple barcodes from idat file names.
Usage
1
getBarcodes(path = getwd(), recurse = FALSE)
Arguments
path
The path or a character vector to the directory or directories in which to find the idat files.
recurse
logical; should the function check subdirectories to derive barcodes from any found idat files. The default is FALSE.
Details
Barcodes will be generated by all found idats in path(s). The default path is the current working directory.
Value
A character vector of barcodes.
Author(s)
Ryan Putney ryanputney@gmail.com
See Also
Examples
1
2
3
4
if(require(minfiData)){
path <- system.file("extdata/5723646052", package="minfiData")
barcodes <- getBarcodes(path = path)
}
skewr documentation built on Nov. 8, 2020, 8:08 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
A convenience function for retrieving simple barcodes from idat file names.
Usage
1 | getBarcodes(path = getwd(), recurse = FALSE)
|
Arguments
path |
The path or a character vector to the directory or directories in which to find the idat files. |
recurse |
logical; should the function check subdirectories to derive barcodes from any found idat files. The default is |
Details
Barcodes will be generated by all found idats in path(s). The default path is the current working directory.
Value
A character vector of barcodes.
Author(s)
Ryan Putney ryanputney@gmail.com
See Also
Examples
1 2 3 4 | if(require(minfiData)){
path <- system.file("extdata/5723646052", package="minfiData")
barcodes <- getBarcodes(path = path)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.