splineTCDiffExpr: Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.

AuthorAgata Michna
Date of publicationNone
MaintainerHerbert Braselmann <braselm@helmholtz-muenchen.de>, Agata Michna <agata.michna@helmholtz-muenchen.de>
LicenseGPL-3
Version0.99.4

View on Bioconductor

Files

splineTCDiffExpr/DESCRIPTION
splineTCDiffExpr/NAMESPACE
splineTCDiffExpr/R
splineTCDiffExpr/R/networkProperties.R
splineTCDiffExpr/R/pathEnrich.R
splineTCDiffExpr/R/splineDiffExprs.R
splineTCDiffExpr/R/splineNetRecon.R
splineTCDiffExpr/R/splinePlot.R
splineTCDiffExpr/build
splineTCDiffExpr/build/vignette.rds
splineTCDiffExpr/data
splineTCDiffExpr/data/TCsimData.rda
splineTCDiffExpr/data/datalist
splineTCDiffExpr/inst
splineTCDiffExpr/inst/doc
splineTCDiffExpr/inst/doc/splineTCDiffExpr.R
splineTCDiffExpr/inst/doc/splineTCDiffExpr.Rnw
splineTCDiffExpr/inst/doc/splineTCDiffExpr.pdf
splineTCDiffExpr/inst/extdata
splineTCDiffExpr/inst/extdata/c2.cp.kegg.v5.0.symbols.gmt
splineTCDiffExpr/man
splineTCDiffExpr/man/TCsimData.Rd splineTCDiffExpr/man/networkProperties.Rd splineTCDiffExpr/man/pathEnrich.Rd splineTCDiffExpr/man/splineDiffExprs.Rd splineTCDiffExpr/man/splineNetRecon.Rd splineTCDiffExpr/man/splinePlot.Rd
splineTCDiffExpr/vignettes
splineTCDiffExpr/vignettes/splineTCDiffExpr.Rnw
splineTCDiffExpr/vignettes/splineTCDiffExpr.bib

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