sscore: S-Score Algorithm for Affymetrix Oligonucleotide Microarrays

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This package contains an implementation of the S-Score algorithm as described by Zhang et al (2002).

Author
Richard Kennedy <rkennedy@ms.soph.uab.edu>, based on C++ code from Li Zhang <zhangli@odin.mdacc.tmc.edu> and Borland Delphi code from Robnet Kerns <rtkerns@vcu.edu>.
Date of publication
None
Maintainer
Richard Kennedy <rkennedy@ms.soph.uab.edu>
License
GPL (>= 2)
Version
1.46.0
URLs

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Man pages

computeAffxRawQ
Computes RawQ using affxparser routines
computeAffxSFandSDT
Compute SF and SDT values using affxparser routines
computeOutlier
Compute outlier probes
computeRawQ
Computes RawQ
computeSFandSDT
Compute SF and SDT values
computeZoneIInfo
Compute zone background and noise
computeZonenoise
Computes zone noise
OneStepBiweightAlgorithm
One-step Tukey's biweight
SScore
Compute S-Score values
SScoreBatch
Compute S-Score values
trimMean
Compute trimmed mean for a vector

Files in this package

sscore/DESCRIPTION
sscore/NAMESPACE
sscore/R
sscore/R/OneStepBiweightAlgorithm.R
sscore/R/SScore.R
sscore/R/SScoreBatch.R
sscore/R/computeAffxRawQ.R
sscore/R/computeAffxSFandSDT.R
sscore/R/computeOutlier.R
sscore/R/computeRawQ.R
sscore/R/computeSFandSDT.R
sscore/R/computeZoneIInfo.R
sscore/R/computeZonenoise.R
sscore/R/trimMean.R
sscore/build
sscore/build/vignette.rds
sscore/inst
sscore/inst/doc
sscore/inst/doc/sscore.R
sscore/inst/doc/sscore.Rnw
sscore/inst/doc/sscore.pdf
sscore/man
sscore/man/OneStepBiweightAlgorithm.Rd
sscore/man/SScore.Rd
sscore/man/SScoreBatch.Rd
sscore/man/computeAffxRawQ.Rd
sscore/man/computeAffxSFandSDT.Rd
sscore/man/computeOutlier.Rd
sscore/man/computeRawQ.Rd
sscore/man/computeSFandSDT.Rd
sscore/man/computeZoneIInfo.Rd
sscore/man/computeZonenoise.Rd
sscore/man/trimMean.Rd
sscore/vignettes
sscore/vignettes/10A
sscore/vignettes/20A
sscore/vignettes/20B
sscore/vignettes/sscore.Rnw
sscore/vignettes/sscore.bib