returnRPKM: RPKM Normalization
In systemPipeR: systemPipeR: NGS workflow and report generation environment
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Converts read counts to RPKM normalized values.
Usage
1
returnRPKM(counts, ranges)
Arguments
counts
Count data frame, e.g. from an RNA-Seq experiment.
ranges
GRangesList object, e.g. generated by exonsBy(txdb, by="gene").
Value
data.frame
Author(s)
Thomas Girke
Examples
1
2
3
4
## Not run:
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))
## End(Not run)
systemPipeR documentation built on Jan. 26, 2021, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Converts read counts to RPKM normalized values.
Usage
1 | returnRPKM(counts, ranges)
|
Arguments
counts |
Count data frame, e.g. from an RNA-Seq experiment. |
ranges |
|
Value
data.frame
Author(s)
Thomas Girke
Examples
1 2 3 4 | ## Not run:
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.