API for tRNA
Analyzing tRNA sequences and structures
| Global functions | |
|---|---|
| .add_padding_to_pos | Source code |
| .add_padding_unpaired | Source code |
| .are_whole_numbers | Source code |
| .assemble_sequences | Source code |
| .checkValueValidity | Source code |
| .check_trna_granges | Source code |
| .check_trna_structure_ident | Source code |
| .getAcceptorStem | Source code |
| .getAnticodonLoop | Source code |
| .getAnticodonStem | Source code |
| .getDiscriminator | Source code |
| .getDloop | Source code |
| .getDprime3 | Source code |
| .getDprime5 | Source code |
| .getDstem | Source code |
| .getTloop | Source code |
| .getTstem | Source code |
| .getVariableLoop | Source code |
| .get_IRanges | Source code |
| .get_IRanges2 | Source code |
| .get_bulges | Source code |
| .get_cca_ends | Source code |
| .get_colour | Source code |
| .get_features_bulged | Source code |
| .get_features_dstem | Source code |
| .get_features_length | Source code |
| .get_features_mismatches | Source code |
| .get_features_tstem | Source code |
| .get_features_unpaired | Source code |
| .get_features_valid | Source code |
| .get_gc_content | Source code |
| .get_hmm_score | Source code |
| .get_ident_structures | Source code |
| .get_infernal_score | Source code |
| .get_introns | Source code |
| .get_loop_positions | Source code |
| .get_mismatches | Source code |
| .get_name_in_parent | Source code |
| .get_plot_w_scores | Source code |
| .get_plot_wo_scores | Source code |
| .get_potential_pseudogene | Source code |
| .get_scan_score | Source code |
| .get_score | Source code |
| .get_secondary_structure_score | Source code |
| .get_seq_lengths | Source code |
| .get_start_end | Source code |
| .get_str_lengths | Source code |
| .get_structures_details | Source code |
| .get_structures_length | Source code |
| .get_tRNA_length | Source code |
| .get_tRNA_structure_type | Source code |
| .get_tRNA_structures | Source code |
| .get_validity_of_structures | Source code |
| .get_width | Source code |
| .get_widths | Source code |
| .has_invalid_char | Source code |
| .is_a_bool | Source code |
| .is_a_string | Source code |
| .is_continous_evenly_spaced_c | Source code |
| .is_non_empty_character | Source code |
| .is_non_empty_string | Source code |
| .join_list | Source code |
| .local_max | Source code |
| .local_min | Source code |
| .local_min_max | Source code |
| .onLoad | Source code |
| .pad_Dloop | Source code |
| .pad_center | Source code |
| .pad_left | Source code |
| .pad_outside | Source code |
| .pad_right | Source code |
| .pad_unpaired_in_stem_region | Source code |
| .pad_variableLoop | Source code |
| .subset_structure_c | Source code |
| .subset_tRNA_loop | Source code |
| .subset_tRNA_stem | Source code |
| gettRNABasePairing | Man page |
| gettRNABasePairing,GRanges-method | Man page |
| gettRNAFeaturePlots | Man page |
| gettRNAFeaturePlots,GRangesList-method | Man page |
| gettRNALoopIDs | Man page |
| gettRNALoopIDs,GRanges-method | Man page |
| gettRNASummary | Man page |
| gettRNASummary,GRanges-method | Man page |
| gettRNASummary,GRangesList-method | Man page |
| gettRNAstructureGRanges | Man page |
| gettRNAstructureGRanges,GRanges-method | Man page |
| gettRNAstructureSeqs | Man page |
| gettRNAstructureSeqs,GRanges-method | Man page |
| gr | Man page |
| gr_eco | Man page |
| gr_human | Man page |
| gr_human2 | Man page |
| hasAcceptorStem | Man page |
| hasAcceptorStem,GRanges-method | Man page |
| hasAnticodonLoop | Man page |
| hasAnticodonLoop,GRanges-method | Man page |
| hasAnticodonStem | Man page |
| hasAnticodonStem,GRanges-method | Man page |
| hasDStem | Man page |
| hasDStem,GRanges-method | Man page |
| hasDloop | Man page |
| hasDloop,GRanges-method | Man page |
| hasTStem | Man page |
| hasTStem,GRanges-method | Man page |
| hasTloop | Man page |
| hasTloop,GRanges-method | Man page |
| hasVariableLoop | Man page |
| hasVariableLoop,GRanges-method | Man page |
| istRNAGRanges | Man page |
| istRNAGRanges,GRanges-method | Man page |
| tRNA | Man page |
| tRNA-data | Man page |
| tRNA-subset | Man page |
