API for tRanslatome
Comparison between multiple levels of gene expression

Global functions
CCComparison	Man page
CCEnrichment	Man page
CVplot	Man page
CVplot,DEGs-method	Man page
DEGs-class	Man page
DEGs.table	Man page
DEGs.table,DEGs-method	Man page
EnrichedSets-class	Man page
FC.threshold	Man page
FC.threshold,DEGs-method	Man page
GOComparison	Man page
GOComparison,GOsets-method	Man page
GOEnrichment	Man page
GOEnrichment,DEGs-method	Man page
GOsets-class	Man page
GOsims-class	Man page
Heatmap	Man page
Heatmap,EnrichedSets-method	Man page
Heatmap,GOsets-method	Man page
Histogram	Man page
Histogram,DEGs-method	Man page
IdentityPlot	Man page
IdentityPlot,GOsims-method	Man page
MAplot	Man page
MAplot,DEGs-method	Man page
Radar	Man page
Radar,EnrichedSets-method	Man page
Radar,GOsets-method	Man page
RegulatoryEnrichment	Man page
RegulatoryEnrichment,DEGs-method	Man page
SDplot	Man page
SDplot,DEGs-method	Man page
Scatterplot	Man page
Scatterplot,DEGs-method	Man page
SimilarityPlot	Man page
SimilarityPlot,GOsims-method	Man page
TranslatomeDataset-class	Man page
average.similarity.scores	Man page
average.similarity.scores,GOsims-method	Man page
comparisonBetweenTwoLists	Source code
computeDEGs	Man page
computeDEGs,TranslatomeDataset-method	Man page
computeGeneListEnrichment	Source code
createspecifictable	Source code
enriched.table	Man page
enriched.table,EnrichedSets-method	Man page
expressionMatrix	Man page
getConditionA	Man page
getConditionA,TranslatomeDataset-method	Man page
getConditionB	Man page
getConditionB,TranslatomeDataset-method	Man page
getConditionC	Man page
getConditionC,TranslatomeDataset-method	Man page
getConditionD	Man page
getConditionD,TranslatomeDataset-method	Man page
getConditionLabels	Man page
getConditionLabels,TranslatomeDataset-method	Man page
getDEGs	Man page
getDEGs,TranslatomeDataset-method	Man page
getDEGsMethod	Man page
getDEGsMethod,DEGs-method	Man page
getDataType	Man page
getDataType,TranslatomeDataset-method	Man page
getExprMatrix	Man page
getExprMatrix,TranslatomeDataset-method	Man page
getLevelLabels	Man page
getLevelLabels,TranslatomeDataset-method	Man page
identity.matrix	Man page
identity.matrix,GOsims-method	Man page
label.condition	Man page
label.condition,DEGs-method	Man page
label.level.DEGs	Man page
label.level.DEGs,DEGs-method	Man page
label.level.enriched	Man page
label.level.enriched,EnrichedSets-method	Man page
limma.DEGs	Man page
methodANOTA	Source code
methodDESeq	Source code
methodEdgeR	Source code
methodLimma	Source code
methodRP	Source code
methodTTest	Source code
newTranslatomeDataset	Man page Source code
regulatory.elements.counts	Man page
regulatory.elements.regulated	Man page
show,DEGs-method	Man page
show,EnrichedSets-method	Man page
show,GOsets-method	Man page
show,TranslatomeDataset-method	Man page
significance.threshold	Man page
significance.threshold,DEGs-method	Man page
similarity.matrix	Man page
similarity.matrix,GOsims-method	Man page
specificOntologyResult	Source code
tRanslatome	Man page
tRanslatome-package	Man page
tRanslatomeData	Man page
tRanslatomeSampleData	Man page
translatome.analysis	Man page