pbmc_small_nested_interactions: Intercellular ligand-receptor interactions for 38 ligands...

Description Usage Format Source

Description

A dataset containing ligand-receptor interactions withibn a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.

Usage

1

Format

A tibble containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with SingleCellSignalR.

sample

sample identifier

ligand

cluster and ligand identifier

receptor

cluster and receptor identifier

ligand.name

ligand name

receptor.name

receptor name

origin

cluster containing ligand

destination

cluster containing receptor

interaction.type

type of interation, paracrine or autocrine

LRscore

interaction score

Source

https://satijalab.org/seurat/v3.1/pbmc3k_tutorial.html


tidySingleCellExperiment documentation built on Nov. 8, 2020, 6:54 p.m.