tradeSeq
trajectory-based differential expression analysis for sequencing data

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Functions
88
Source code
33
Man pages
22
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tradeSeq: trajectory-based differential expression analysis for sequencing data
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API

API for tradeSeq
trajectory-based differential expression analysis for sequencing data

Global functions
.assignCells Source code
.associationTest Source code
.associationTest_conditions Source code
.checks Source code
.clusterExpressionPatterns Source code
.conditionTest Source code
.diffEndTest Source code
.earlyDETest Source code
.evaluateK Source code
.findKnots Source code
.fitGAM Source code
.getFoldChanges Source code
.getModelReference Source code
.getPredictCustomPointDf Source code
.getPredictEndPointDf Source code
.getPredictRangeDf Source code
.getPredictStartPointDf Source code
.get_offset Source code
.patternDf Source code
.patternDfPairwise Source code
.plotGeneCount Source code
.plotSmoothers Source code
.plotSmoothers_conditions Source code
.plotSmoothers_sce Source code
.predictSmooth Source code
.predictSmooth_conditions Source code
.startVsEndTest Source code
associationTest Man page
associationTest,SingleCellExperiment-method Man page
associationTest,list-method Man page
celltype Man page
clusterExpressionPatterns Man page
clusterExpressionPatterns,SingleCellExperiment-method Man page
clusterExpressionPatterns,list-method Man page
conditionTest Man page
conditionTest,SingleCellExperiment-method Man page
countMatrix Man page
crv Man page
diffEndTest Man page
diffEndTest,SingleCellExperiment-method Man page
diffEndTest,list-method Man page
earlyDETest Man page
earlyDETest,SingleCellExperiment-method Man page
earlyDETest,list-method Man page
evaluateK Man page
evaluateK,CellDataSet-method Man page
evaluateK,SingleCellExperiment-method Man page
evaluateK,dgCMatrix-method Man page
evaluateK,matrix-method Man page
extract_monocle_info Man page Source code
fitGAM Man page
fitGAM,CellDataSet-method Man page
fitGAM,SingleCellExperiment-method Man page
fitGAM,dgCMatrix-method Man page
fitGAM,matrix-method Man page
gamList Man page
getEigenStatGAM Source code
getEigenStatGAMFC Source code
getSmootherPvalues Man page Source code
getSmootherTestStats Man page Source code
nknots Man page
nknots,SingleCellExperiment-method Man page
nknots,list-method Man page
patternTest Man page
patternTest,SingleCellExperiment-method Man page
patternTest,list-method Man page
plotGeneCount Man page
plotGeneCount,CellDataSet-method Man page
plotGeneCount,SingleCellExperiment-method Man page
plotGeneCount,SlingshotDataSet-method Man page
plotSmoothers Man page
plotSmoothers,SingleCellExperiment-method Man page
plotSmoothers,gam-method Man page
predictCells Man page
predictCells,SingleCellExperiment-method Man page
predictCells,list-method Man page
predictGAM Source code
predictSmooth Man page
predictSmooth,SingleCellExperiment-method Man page
predictSmooth,list-method Man page
sds Man page
startVsEndTest Man page
startVsEndTest,SingleCellExperiment-method Man page
startVsEndTest,list-method Man page
waldTestFC Source code
tradeSeq documentation built on Nov. 8, 2020, 7:51 p.m.

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