extract_monocle_info: Extract info from Monocle models

Description Usage Arguments Details Value

View source: R/utils.R

Description

This function extracts info that will be used downstream to make CellDataSet objects compatible with a tradeSeq analysis

Usage

1

Arguments

cds

A CellDataSet object.

Details

For now, this only works for the DDRTree dimentionality reduction. It is the one recommanded by the Monocle developers.

Value

A list with four objects. A pseudotime matrix and a cellWeights matrix that can be used as input to fitGAM or evaluateK, the reduced dimension matrix for the cells, and a list of length the number of lineages, containing the reduced dimension of each lineage.


tradeSeq documentation built on Nov. 8, 2020, 7:51 p.m.