extract_monocle_info: Extract info from Monocle models
In tradeSeq: trajectory-based differential expression analysis for sequencing data
Description
Usage
Arguments
Details
Value
Description
This function extracts info that will be used downstream to make
CellDataSet objects compatible with a tradeSeq
analysis
Usage
1
extract_monocle_info(cds)
Arguments
cds
A CellDataSet object.
Details
For now, this only works for the DDRTree dimentionality reduction.
It is the one recommanded by the Monocle developers.
Value
A list with four objects. A pseudotime matrix and a cellWeights
matrix that can be used as input to fitGAM or
evaluateK, the reduced dimension matrix for the cells, and a
list of length the number of lineages, containing the reduced dimension of
each lineage.
tradeSeq documentation built on Nov. 8, 2020, 7:51 p.m.
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Description Usage Arguments Details Value
Description
This function extracts info that will be used downstream to make
CellDataSet objects compatible with a tradeSeq
analysis
Usage
1 | extract_monocle_info(cds)
|
Arguments
cds |
A |
Details
For now, this only works for the DDRTree dimentionality reduction. It is the one recommanded by the Monocle developers.
Value
A list with four objects. A pseudotime matrix and a cellWeights
matrix that can be used as input to fitGAM or
evaluateK, the reduced dimension matrix for the cells, and a
list of length the number of lineages, containing the reduced dimension of
each lineage.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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