Files in tradeSeq

trajectory-based differential expression analysis for sequencing data

README.md R/patternTest.R R/plotGeneCount.R R/plotSmoothers.R R/predictCells.R R/AllGenerics.R R/nknots.R R/utils.R R/associationTest.R R/fitGAM.R R/getSmootherTestStats.R R/clusterExpressionPatterns.R R/conditionTest.R R/predictSmooth.R R/getSmootherPvalues.R R/evaluateK.R R/earlyDETest.R R/data.R R/startVsEndTest.R R/diffEndTest.R vignettes/Monocle.Rmd vignettes/multipleConditions.Rmd vignettes/fitGAM.Rmd vignettes/tradeSeq.Rmd man/celltype.Rd man/clusterExpressionPatterns.Rd man/extract_monocle_info.Rd man/evaluateK.Rd man/patternTest.Rd man/diffEndTest.Rd man/predictCells.Rd man/plotGeneCount.Rd man/getSmootherPvalues.Rd man/earlyDETest.Rd man/predictSmooth.Rd man/crv.Rd man/conditionTest.Rd man/startVsEndTest.Rd man/gamList.Rd man/sds.Rd man/fitGAM.Rd man/plotSmoothers.Rd man/getSmootherTestStats.Rd man/nknots.Rd man/countMatrix.Rd man/associationTest.Rd tests/testthat.R tests/testthat/testOneLineage.R tests/testthat/testPredict.R tests/testthat/testMonocle.R tests/testthat/testThreeLineages.R tests/testthat/testFailures.R tests/testthat/testConditions.R tests/testthat/testDETestDetails.R tests/testthat/testPlots.R tests/testthat/testConsistentOutput.R tests/testthat/testFoldChanges.R inst/doc/Monocle.Rmd inst/doc/multipleConditions.Rmd inst/doc/fitGAM.Rmd inst/doc/tradeSeq.R inst/doc/Monocle.R inst/doc/fitGAM.R inst/doc/tradeSeq.Rmd