vbmp: Variational Bayesian Multinomial Probit Regression
Version 1.44.0

Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. It estimates class membership posterior probability employing variational and sparse approximation to the full posterior. This software also incorporates feature weighting by means of Automatic Relevance Determination.

Browse man pages Browse package API and functions Browse package files

AuthorNicola Lama <nicola.lama@unina2.it>, Mark Girolami <girolami@dcs.gla.ac.uk>
Bioconductor views Classification
Date of publicationNone
MaintainerNicola Lama <nicola.lama@unina2.it>
LicenseGPL (>= 2)
Version1.44.0
URL http://bioinformatics.oxfordjournals.org/cgi/content/short/btm535v1
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("vbmp")

Man pages

BRCA12: BRCA tumour dataset
covParams: VBMP covariance functions parameters
lowerBound: VBMP Lower bound estimate
plotDiagnostics: VBMP covariance diagnostics plot
predClass: VBMP Predicted class values
predError: Out-of-Sample VBMP Prediction error
predictCPP: VBMP predict functions parameters
predLik: VBMP predictive likelihood estimate
vbmp: Variational Bayesian Multinomial Probit Regression with...

Functions

BRCA12 Man page
covParams Man page
lowerBound Man page
plotDiagnostics Man page
predClass Man page
predError Man page
predLik Man page
predictCPP Man page
vbmp Man page

Files

DESCRIPTION
NAMESPACE
R
R/computeKernel.R
R/covParams.R
R/distSqrd.R
R/gaussQuad.R
R/genCPP.classic.R
R/genCPP.quad.R
R/lowerBound.R
R/plotDiagnostics.R
R/predClass.R
R/predError.R
R/predLik.R
R/predictCPP.R
R/printTrace.R
R/rexponential.R
R/safeLog.R
R/safeLogDet.R
R/safeNormCDF.R
R/safeNormPDF.R
R/tmean.R
R/tmean.classic.R
R/tmean.quad.R
R/varphiUpdate.R
R/vbmp.R
build
build/vignette.rds
data
data/BRCA12.RData
data/datalist
inst
inst/doc
inst/doc/vbmp.R
inst/doc/vbmp.Rnw
inst/doc/vbmp.pdf
man
man/BRCA12.Rd
man/covParams.Rd
man/lowerBound.Rd
man/plotDiagnostics.Rd
man/predClass.rd
man/predError.Rd
man/predLik.Rd
man/predictCPP.rd
man/vbmp.Rd
vignettes
vignettes/vbmp.Rnw
vignettes/vbmp.bib
vbmp documentation built on May 20, 2017, 9:13 p.m.