vbmp: Variational Bayesian Multinomial Probit Regression

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Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. It estimates class membership posterior probability employing variational and sparse approximation to the full posterior. This software also incorporates feature weighting by means of Automatic Relevance Determination.

Author
Nicola Lama <nicola.lama@unina2.it>, Mark Girolami <girolami@dcs.gla.ac.uk>
Date of publication
None
Maintainer
Nicola Lama <nicola.lama@unina2.it>
License
GPL (>= 2)
Version
1.42.0
URLs

View on Bioconductor

Man pages

BRCA12
BRCA tumour dataset
covParams
VBMP covariance functions parameters
lowerBound
VBMP Lower bound estimate
plotDiagnostics
VBMP covariance diagnostics plot
predError
Out-of-Sample VBMP Prediction error
predLik
VBMP predictive likelihood estimate
vbmp
Variational Bayesian Multinomial Probit Regression with...

Files in this package

vbmp/DESCRIPTION
vbmp/NAMESPACE
vbmp/R
vbmp/R/computeKernel.R
vbmp/R/covParams.R
vbmp/R/distSqrd.R
vbmp/R/gaussQuad.R
vbmp/R/genCPP.classic.R
vbmp/R/genCPP.quad.R
vbmp/R/lowerBound.R
vbmp/R/plotDiagnostics.R
vbmp/R/predClass.R
vbmp/R/predError.R
vbmp/R/predLik.R
vbmp/R/predictCPP.R
vbmp/R/printTrace.R
vbmp/R/rexponential.R
vbmp/R/safeLog.R
vbmp/R/safeLogDet.R
vbmp/R/safeNormCDF.R
vbmp/R/safeNormPDF.R
vbmp/R/tmean.R
vbmp/R/tmean.classic.R
vbmp/R/tmean.quad.R
vbmp/R/varphiUpdate.R
vbmp/R/vbmp.R
vbmp/build
vbmp/build/vignette.rds
vbmp/data
vbmp/data/BRCA12.RData
vbmp/data/datalist
vbmp/inst
vbmp/inst/doc
vbmp/inst/doc/vbmp.R
vbmp/inst/doc/vbmp.Rnw
vbmp/inst/doc/vbmp.pdf
vbmp/man
vbmp/man/BRCA12.Rd
vbmp/man/covParams.Rd
vbmp/man/lowerBound.Rd
vbmp/man/plotDiagnostics.Rd
vbmp/man/predClass.rd
vbmp/man/predError.Rd
vbmp/man/predLik.Rd
vbmp/man/predictCPP.rd
vbmp/man/vbmp.Rd
vbmp/vignettes
vbmp/vignettes/vbmp.Rnw
vbmp/vignettes/vbmp.bib