virtualArray: Build virtual array from different microarray platforms

This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.

AuthorAndreas Heider
Date of publicationNone
MaintainerAndreas Heider <aheider@trm.uni-leipzig.de>
LicenseGPL-3
Version1.8.0

View on Bioconductor

Files

virtualArray/DESCRIPTION
virtualArray/NAMESPACE
virtualArray/R
virtualArray/R/AllGenerics.R
virtualArray/R/Beta.NA.R
virtualArray/R/L.R
virtualArray/R/aprior.R
virtualArray/R/bprior.R
virtualArray/R/build.design.R
virtualArray/R/calculateOverlaps.R
virtualArray/R/design.mat.R
virtualArray/R/filter.absent.R
virtualArray/R/int.eprior.R
virtualArray/R/it.sol.R
virtualArray/R/list.batch.R
virtualArray/R/methods-virtualArrayComBat.R
virtualArray/R/more_batch_effect_removal_methods.R
virtualArray/R/onLoad.R
virtualArray/R/postmean.R
virtualArray/R/postvar.R
virtualArray/R/trim.dat.R
virtualArray/R/virtualArray-internal.R
virtualArray/R/virtualArrayBuildExprs.R
virtualArray/R/virtualArrayBuildSampleInfo.R
virtualArray/R/virtualArrayBuildSingleSampleInfo.R
virtualArray/R/virtualArrayBuildfData.R
virtualArray/R/virtualArrayCompile.R
virtualArray/R/virtualArrayDirs.R
virtualArray/R/virtualArrayExpressionSets.R
virtualArray/R/virtualArrayHclust.R
virtualArray/R/virtualArrayLoadRaw.R
virtualArray/R/virtualArrayMergeRecurse.R
virtualArray/build
virtualArray/build/vignette.rds
virtualArray/data
virtualArray/data/GPLs.RData
virtualArray/data/sysdata.rda
virtualArray/inst
virtualArray/inst/CITATION
virtualArray/inst/doc
virtualArray/inst/doc/virtualArray.R
virtualArray/inst/doc/virtualArray.Rnw
virtualArray/inst/doc/virtualArray.pdf
virtualArray/inst/extdata
virtualArray/inst/extdata/sample_info.txt
virtualArray/inst/extdata/sample_info_mod.txt
virtualArray/man
virtualArray/man/GPLs.Rd virtualArray/man/normalize.ExpressionSet.gq.Rd virtualArray/man/normalize.ExpressionSet.mc.Rd virtualArray/man/normalize.ExpressionSet.mrs.Rd virtualArray/man/normalize.ExpressionSet.nordi.Rd virtualArray/man/normalize.ExpressionSet.qd.Rd virtualArray/man/sample_info_imported.Rd virtualArray/man/virtualArray-package.Rd virtualArray/man/virtualArrayBuildExprs.Rd virtualArray/man/virtualArrayBuildSampleInfo.Rd virtualArray/man/virtualArrayBuildfData.Rd virtualArray/man/virtualArrayComBat.Rd virtualArray/man/virtualArrayCompile.Rd virtualArray/man/virtualArrayDirs.Rd virtualArray/man/virtualArrayExpressionSets.Rd virtualArray/man/virtualArrayHclust.Rd virtualArray/man/virtualArrayLoadRaw.Rd virtualArray/man/virtualArrayMergeRecurse.Rd
virtualArray/vignettes
virtualArray/vignettes/virtualArray-016.pdf
virtualArray/vignettes/virtualArray.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.