vtpnet: variant-transcription factor-phenotype networks

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")
AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views Network
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version0.14.0

View on Bioconductor

Functions

cancerMap Man page
filterGWASbyMap Man page
getMtags Man page
getOneHits Man page
gwMatchPWM Man page
matrc Man page
maurGWAS Man page
MdbSearchToDisk Man page
pax4 Man page
pax4_75 Man page
pax4_85 Man page
rng2facHits Man page
runfimo Man page
setupGWPM Man page
vtpnet Man page
vtpnet-package Man page

Files

DESCRIPTION
NAMESPACE
R
R/filterGWASbyMap.R R/runfimo.R R/unipHits.R R/unipsearch.R
altDE
build
build/vignette.rds
data
data/cancerMap.rda
data/datalist
data/maurGWAS.rda
data/pax4.rda
data/pax4_75.rda
data/pax4_85.rda
inst
inst/doc
inst/doc/vtpnet.R
inst/doc/vtpnet.Rnw
inst/doc/vtpnet.pdf
inst/extdata
man
man/vtpnet-package.Rd
vignettes
vignettes/vtpnet.Rnw
vignettes/vtpnet.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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