vtpnet: variant-transcription factor-phenotype networks
Version 0.16.0

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Browse man pages Browse package API and functions Browse package files

AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views Network
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version0.16.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Man pages

vtpnet-package: variant-transcription factor-phenotype networks

Functions

MdbSearchToDisk Man page Source code
cancerMap Man page
filterGWASbyMap Man page Source code
getMtags Man page Source code
getOneHits Man page Source code
gwMatchPWM Man page Source code
matrc Man page Source code
maurGWAS Man page
pax4 Man page
pax4_75 Man page
pax4_85 Man page
rng2facHits Man page Source code
runfimo Man page Source code
setupGWPM Man page Source code
vtpnet Man page
vtpnet-package Man page

Files

DESCRIPTION
NAMESPACE
R
R/filterGWASbyMap.R
R/runfimo.R
R/unipHits.R
R/unipsearch.R
altDE
build
build/vignette.rds
data
data/cancerMap.rda
data/datalist
data/maurGWAS.rda
data/pax4.rda
data/pax4_75.rda
data/pax4_85.rda
inst
inst/doc
inst/doc/vtpnet.R
inst/doc/vtpnet.Rnw
inst/doc/vtpnet.pdf
inst/extdata
man
man/vtpnet-package.Rd
vignettes
vignettes/vtpnet.Rnw
vignettes/vtpnet.bib
vtpnet documentation built on May 20, 2017, 10:29 p.m.