generateMap: Generate a plate map according to the input parameters
In wpm: Well Plate Maker

Description Usage Arguments Details Value

This function generates a plate map using a backtracking algorithm and returns a dataframe if success. If it fails to find a solution, returns NULL. If there are not enough wells to place all the samples, returns 0.

generateMap(
  user_df,
  nb_rows,
  nb_cols,
  df_forbidden,
  mod,
  max_it,
  updateProgress = NULL
)

`user_df`	dataframe containing 9 features: Sample, ID, Group, Sample.name, Well, Status, Row, Column, Plate. See details.
`nb_rows`	numeric, number of lines on the plate
`nb_cols`	numeric, number of columns on the plate
`df_forbidden`	dataframe with the same structure than user_df, but for the forbidden, buffer solutions and Not randomized wells.
`mod`	character, neighborhood spatial constraint
`max_it`	numeric, maximum number of attempts to generate a plate plan before returning a failure.
`updateProgress`	shiny object, reports progress to the user.

The dataframe is generated using dedicated functions of the wpm package: 'convertCSV()', 'convertESet()' or 'convertSE()'. But the user can also generate it by hand.

A number of attempts is allowed. Consequently, if the maximal number if attempts is reeched and no solution was found with the backtracking (i.e. the randomWalk does not return a dataframe), this function prints a warning message and returns NULL. If a solution is found, then it returns the dataframe.

Returns a dataframe containing all the data of the plate map(s)

wpm documentation built on Nov. 8, 2020, 5:34 p.m.