yamss: Tools for high-throughput metabolomics

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("yamss")
AuthorLeslie Myint [cre, aut], Kasper Daniel Hansen [aut]
Bioconductor views MassSpectrometry Metabolomics Software
Date of publicationNone
MaintainerLeslie Myint <lmyint1@jhu.edu>
LicenseArtistic-2.0
Version1.2.0
https://github.com/hansenlab/yamss

View on Bioconductor

Files

.travis.yml
DESCRIPTION
NAMESPACE
R
R/DataClasses.R R/bakedpi.R R/functions.R R/reading.R R/slicepi.R R/utils.R
README.md
build
build/vignette.rds
data
data/cmsRawExample.rda
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/yamss.R
inst/doc/yamss.Rmd
inst/doc/yamss.html
inst/scripts
inst/scripts/digests.rda
inst/scripts/makeCmsRawExample.R inst/scripts/test_digest.R
inst/scripts/test_digest.Rout
man
man/CMSproc-class.Rd man/CMSraw-class.Rd man/CMSslice-class.Rd man/bakedpi.Rd
man/cmsRawExample.rd
man/diffrep.Rd man/getEICS.Rd man/getTIC.Rd man/plotDensityRegion.Rd
man/readMSdata.rd
man/slicepi.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test-bakedpi.R tests/testthat/test-read.R
vignettes
vignettes/framed.sty
vignettes/yamss.Rmd
vignettes/yamss.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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