Man pages for yarn
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
| annotateFromBiomart | Annotate your Expression Set with biomaRt |
| bladder | Bladder RNA-seq data from the GTEx consortium |
| checkMisAnnotation | Check for wrong annotation of a sample using classical MDS... |
| checkTissuesToMerge | Check tissues to merge based on gene expression profile |
| downloadGTEx | Download GTEx files and turn them into ExpressionSet object |
| extractMatrix | Extract the appropriate matrix |
| filterGenes | Filter specific genes |
| filterLowGenes | Filter genes that have less than a minimum threshold CPM for... |
| filterMissingGenes | Filter genes not expressed in any sample |
| filterSamples | Filter samples |
| normalizeTissueAware | Normalize in a tissue aware context |
| plotCMDS | Plot classical MDS of dataset |
| plotDensity | Density plots of columns in a matrix |
| plotHeatmap | Plot heatmap of most variable genes |
| qsmooth | Quantile shrinkage normalization |
| qstats | Compute quantile statistics |
| skin | Skin RNA-seq data from the GTEx consortium |
