API for zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq Data

Global functions
ZinbModel Man page
ZinbModel-class Man page
computeDevianceResiduals Man page Source code
computeObservationalWeights Man page Source code
getAlpha_mu Man page
getAlpha_mu,ZinbModel-method Man page
getAlpha_pi Man page
getAlpha_pi,ZinbModel-method Man page
getBeta_mu Man page
getBeta_mu,ZinbModel-method Man page
getBeta_pi Man page
getBeta_pi,ZinbModel-method Man page
getEpsilon_W Man page
getEpsilon_W,ZinbModel-method Man page
getEpsilon_alpha Man page
getEpsilon_alpha,ZinbModel-method Man page
getEpsilon_beta_mu Man page
getEpsilon_beta_mu,ZinbModel-method Man page
getEpsilon_beta_pi Man page
getEpsilon_beta_pi,ZinbModel-method Man page
getEpsilon_gamma_mu Man page
getEpsilon_gamma_mu,ZinbModel-method Man page
getEpsilon_gamma_pi Man page
getEpsilon_gamma_pi,ZinbModel-method Man page
getEpsilon_zeta Man page
getEpsilon_zeta,ZinbModel-method Man page
getGamma_mu Man page
getGamma_mu,ZinbModel-method Man page
getGamma_pi Man page
getGamma_pi,ZinbModel-method Man page
getLogMu Man page
getLogMu,ZinbModel-method Man page
getLogitPi Man page
getLogitPi,ZinbModel-method Man page
getMu Man page
getMu,ZinbModel-method Man page
getPhi Man page
getPhi,ZinbModel-method Man page
getPi Man page
getPi,ZinbModel-method Man page
getTheta Man page
getTheta,ZinbModel-method Man page
getV_mu Man page
getV_mu,ZinbModel-method Man page
getV_pi Man page
getV_pi,ZinbModel-method Man page
getW Man page
getW,ZinbModel-method Man page
getX_mu Man page
getX_mu,ZinbModel-method Man page
getX_pi Man page
getX_pi,ZinbModel-method Man page
getZeta Man page
getZeta,ZinbModel-method Man page
glmWeightedF Man page Source code
imputeZeros Man page Source code
independentFiltering Man page Source code
loglik Man page
loglik,ZinbModel,matrix-method Man page
nFactors Man page
nFactors,ZinbModel-method Man page
nFeatures Man page
nFeatures,ZinbModel-method Man page
nParams Man page
nParams,ZinbModel-method Man page
nSamples Man page
nSamples,ZinbModel-method Man page
optimleft_fun Source code
optimright_fun Source code
orthogonalizeTraceNorm Man page Source code
penalty Man page
penalty,ZinbModel-method Man page
pvalueAdjustment Man page Source code
s_wholenumber Source code
show,ZinbModel-method Man page
solveRidgeRegression Man page Source code
toydata Man page
zinb.loglik Man page Source code
zinb.loglik.dispersion Man page Source code
zinb.loglik.dispersion.gradient Man page Source code
zinb.loglik.matrix Man page Source code
zinb.loglik.regression Man page Source code
zinb.loglik.regression.gradient Man page Source code
zinb.regression.parseModel Man page Source code
zinbAIC Man page
zinbAIC,ZinbModel,matrix-method Man page
zinbBIC Man page
zinbBIC,ZinbModel,matrix-method Man page
zinbFit Man page
zinbFit,SummarizedExperiment-method Man page
zinbFit,matrix-method Man page
zinbInitialize Man page Source code
zinbModel Man page Source code
zinbOptimize Man page Source code
zinbOptimizeDispersion Man page Source code
zinbSim Man page
zinbSim,ZinbModel-method Man page
zinbwave Man page
zinbwave,SummarizedExperiment-method Man page
zinbwave documentation built on Nov. 17, 2017, 1:56 p.m.