Biocview "Networks"

FunctionalNetworks
An algorithm for gene and gene set network inference
hanjunwei-lab/PAGI
The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.
PAGI
The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.
MPINet
The package can implement the network-based metabolite pathway identification of pathways.

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