MPINet: The package can implement the network-based metabolite pathway identification of pathways.

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(1) Our system provides a network-based strategies for metabolite pathway identification.(2) The MPINet can support the identification of pathways using Hypergeometric test based on metabolite set. (3)MPINet can support pathways from multiple databases.

Author
Yanjun Xu, Chunquan Li and Xia Li
Date of publication
2013-07-28 08:30:30
Maintainer
Yanjun Xu <tonghua605@163.com>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

ExampleData
The example data in the environment variable of the system
GetExampleData
Get the example data set
getPSS
Evaluate the CGNB score of metabolites
identifypathway
A novel pathway identification approach based on metabolite...
MPEANet-internal
MPINet internal functions
MPINetData
The variables in the environment variable 'MPINetData' of the...
printGraph
Print the results of identification

Files in this package

MPINet
MPINet/inst
MPINet/inst/localdata
MPINet/inst/localdata/prostate.txt
MPINet/inst/doc
MPINet/inst/doc/MPINet.pdf
MPINet/inst/doc/MPINet.Rnw
MPINet/inst/doc/MPINet.R
MPINet/NAMESPACE
MPINet/data
MPINet/data/MPINetData.rda
MPINet/R
MPINet/R/performpcls.R
MPINet/R/identifypathway.R
MPINet/R/GetExampleData.R
MPINet/R/getPSS.R
MPINet/R/getEnvironmentData.R
MPINet/vignettes
MPINet/vignettes/MPINet.Rnw
MPINet/MD5
MPINet/DESCRIPTION
MPINet/man
MPINet/man/printGraph.Rd
MPINet/man/ExampleData.Rd
MPINet/man/getPSS.Rd
MPINet/man/MPINetData.Rd
MPINet/man/identifypathway.Rd
MPINet/man/MPEANet-internal.Rd
MPINet/man/GetExampleData.Rd