GetExampleData: Get the example data set

In MPINet: The package can implement the network-based metabolite pathway identification of pathways.

Description

Get the example data set.

Usage

     GetExampleData(dataset)

Arguments

dataset

A character string, must be one of "prostate" (default), "diabetes1" and "diabetes2".

Details

The example data are obtained from the environment variable MPINetData.

Value

A character vector of interesting metabolites, for each element is a pubchem CID

Author(s)

Yanjun Xu <[e-mail]>, Chunquan Li <[e-mail]> and Xia Li <[e-mail]>

References

Sreekumar, A., Poisson, L.M., Rajendiran, T.M., Khan, A.P., Cao, Q., Yu, J., Laxman, B., Mehra, R., Lonigro, R.J., Li, Y. et al. (2009) Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature, 457, 910-914.

Suhre, K., Meisinger, C., Doring, A., Altmaier, E., Belcredi, P., Gieger, C., Chang, D., Milburn, M.V., Gall, W.E., Weinberger, K.M. et al. (2010) Metabolic footprint of diabetes: a multiplatform metabolomics study in an epidemiological setting. PLoS ONE, 5, e13953.

Examples

## Not run: 

#obtain the metastatic prosate cancer data set
Exampledata<-GetExampleData(dataset="prostate")
head(Exampledata)


## End(Not run)

MPINet documentation built on May 1, 2019, 8:04 p.m.