Man pages for ACDC
Analysis of Congruent Diversification Classes
| ACDC-package | ACDC: Analysis of Congruent Diversification Classes |
| congruent.models | Create a set of congruent models |
| create.model | Computes the congruent class, i.e., the pulled rates. |
| get.gmrf.global.scale | Global scale for GMRF using linear interpolation of... |
| get.hsmrf.global.scale | Global scale for HSMRF using linear interpolation of... |
| model2df | model2df |
| plot.ACDC | Plots the rate functions including the pulled rates. |
| plot.ACDCset | Plots the rate functions |
| primates | Primates phylogenetic tree |
| primates_ebd | RevBayes Primates birth-death model |
| primates_ebd_log | Primates birth-death model |
| primates_ebd_tess | TESS Primates birth-death model |
| primates_ebd_treepar | TreePar Primates birth-death model |
| print.ACDC | Print method for ACDC object |
| print.ACDCposterior | Title |
| print.ACDCset | Print method for ACDCset object |
| print.ACDCsets | print.ACDCsets |
| read.RevBayes | read RevBayes log file |
| sample.basic.models | Samples simple increase/decrease models through time with... |
| sample.congruence.class | Stochastic exploration of congruent models. |
| sample.congruence.class.posterior | Stochastic exploration of congruent models for all samples in... |
| sample.rates | Sample custom functions through time. |
| summarize.posterior | Summarize trends in the posterior |
| summarize.trends | Summarize trends in the congruence class |
