ACDC-package: ACDC: Analysis of Congruent Diversification Classes

In ACDC: Analysis of Congruent Diversification Classes

Description

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

References

• Louca, S., & Pennell, M. W. (2020). Extant timetrees are consistent with a myriad of diversification histories. Nature, 580(7804), 502-505.

Author(s)

Maintainer: Bjørn Tore Kopperud [e-mail]

Authors:

• Sebastian Höhna

• Andrew F. Magee

See Also

Useful links:

• https://github.com/afmagee/ACDC

ACDC documentation built on Jan. 13, 2022, 1:08 a.m.