AFLPsim: Hybrid Simulation and Genome Scan for Dominant Markers
Version 0.4-2

Hybrid simulation functions for dominant genetic data and genome scan methods.

AuthorFrancisco Balao [aut, cre], Juan Luis Garca-Castao [aut]
Date of publication2015-08-18 15:37:24
MaintainerFrancisco Balao <fbalao@us.es>
LicenseGPL (>= 2)
Version0.4-2
URL http://www.r-project.org http://personal.us.es/fbalao/software.html
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("AFLPsim")

Getting started

Package overview
README.md

Popular man pages

bayescan: Identifying candidate loci under natural selection with...
demosimhybrid: Demographic model of introgressive hybridization
gscan: Genome scan for hybrids
hybridize: AFLP simulator with selection from parental data
hybridsim: AFLP simulator with selection
sim2bayescan: Converting hybridsim object to a Bayescan input file
sim2newhybrids: Converting hybridsim object to a NewHybrids input file
See all...

All man pages Function index File listing

Man pages

AFLPsim-package: Hybrid Simulation and Genome Scan for Dominant Markers
bayescan: Identifying candidate loci under natural selection with...
demosimhybrid: Demographic model of introgressive hybridization
gscan: Genome scan for hybrids
hybridindex: Estimate hybrid index por 'hybridsim' objects
hybridize: AFLP simulator with selection from parental data
hybridsim: AFLP simulator with selection
plot.demosimhybrid: Plotting 'demosimhybrid' objects
plot.hybridsim: Plotting hybridsim objects
sim2arlequin: Converting hybridsim object to a Arlequin input file
sim2bayescan: Converting hybridsim object to a Bayescan input file
sim2genind: Converting a hybridsim object to a genind object
sim2introgress: Converting hybridsim object to introgress
sim2newhybrids: Converting hybridsim object to a NewHybrids input file
sim2popgene: Converting hybridsim object to a PopGene input file
sim2structure: Convert a hybridsim object to a STRUCTURE input file

Functions

Files

inst
inst/CITATION
inst/NEWS.Rd
inst/files
inst/files/SpeciesA.txt
inst/files/SpeciesB.txt
inst/doc
inst/doc/AFLPsimManual.pdf
inst/doc/AFLPsimManual.pdf.asis
NAMESPACE
R
R/hybridindex.R
R/sim2newhybrids.R
R/sim2bayescan.R
R/sim2structure.R
R/gscan.R
R/hybridsim.R
R/sim2arlequin.R
R/hybridize.R
R/bayescan.R
R/demosimhybrid.R
R/plot.demosimhybrid.R
R/sim2introgress.R
R/sim2genind.R
R/plot.hybridsim.R
R/sim2popgene.R
vignettes
vignettes/AFLPsimManual.pdf.asis
README.md
MD5
README
build
build/vignette.rds
DESCRIPTION
man
man/sim2introgress.Rd
man/plot.demosimhybrid.Rd
man/bayescan.Rd
man/plot.hybridsim.Rd
man/hybridsim.Rd
man/AFLPsim-package.Rd
man/sim2arlequin.Rd
man/sim2popgene.Rd
man/hybridize.Rd
man/sim2newhybrids.Rd
man/demosimhybrid.Rd
man/hybridindex.Rd
man/sim2bayescan.Rd
man/sim2genind.Rd
man/gscan.Rd
man/sim2structure.Rd
AFLPsim documentation built on May 19, 2017, 8:30 a.m.

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