AFLPsim: Hybrid Simulation and Genome Scan for Dominant Markers

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Hybrid simulation functions for dominant genetic data and genome scan methods.

Author
Francisco Balao [aut, cre], Juan Luis Garca-Castao [aut]
Date of publication
2015-08-18 15:37:24
Maintainer
Francisco Balao <fbalao@us.es>
License
GPL (>= 2)
Version
0.4-2
URLs

View on CRAN

Man pages

AFLPsim-package
Hybrid Simulation and Genome Scan for Dominant Markers
bayescan
Identifying candidate loci under natural selection with...
demosimhybrid
Demographic model of introgressive hybridization
gscan
Genome scan for hybrids
hybridindex
Estimate hybrid index por 'hybridsim' objects
hybridize
AFLP simulator with selection from parental data
hybridsim
AFLP simulator with selection
plot.demosimhybrid
Plotting 'demosimhybrid' objects
plot.hybridsim
Plotting hybridsim objects
sim2arlequin
Converting hybridsim object to a Arlequin input file
sim2bayescan
Converting hybridsim object to a Bayescan input file
sim2genind
Converting a hybridsim object to a genind object
sim2introgress
Converting hybridsim object to introgress
sim2newhybrids
Converting hybridsim object to a NewHybrids input file
sim2popgene
Converting hybridsim object to a PopGene input file
sim2structure
Convert a hybridsim object to a STRUCTURE input file

Files in this package

AFLPsim
AFLPsim/inst
AFLPsim/inst/CITATION
AFLPsim/inst/NEWS.Rd
AFLPsim/inst/files
AFLPsim/inst/files/SpeciesA.txt
AFLPsim/inst/files/SpeciesB.txt
AFLPsim/inst/doc
AFLPsim/inst/doc/AFLPsimManual.pdf
AFLPsim/inst/doc/AFLPsimManual.pdf.asis
AFLPsim/NAMESPACE
AFLPsim/R
AFLPsim/R/hybridindex.R
AFLPsim/R/sim2newhybrids.R
AFLPsim/R/sim2bayescan.R
AFLPsim/R/sim2structure.R
AFLPsim/R/gscan.R
AFLPsim/R/hybridsim.R
AFLPsim/R/sim2arlequin.R
AFLPsim/R/hybridize.R
AFLPsim/R/bayescan.R
AFLPsim/R/demosimhybrid.R
AFLPsim/R/plot.demosimhybrid.R
AFLPsim/R/sim2introgress.R
AFLPsim/R/sim2genind.R
AFLPsim/R/plot.hybridsim.R
AFLPsim/R/sim2popgene.R
AFLPsim/vignettes
AFLPsim/vignettes/AFLPsimManual.pdf.asis
AFLPsim/README.md
AFLPsim/MD5
AFLPsim/README
AFLPsim/build
AFLPsim/build/vignette.rds
AFLPsim/DESCRIPTION
AFLPsim/man
AFLPsim/man/sim2introgress.Rd
AFLPsim/man/plot.demosimhybrid.Rd
AFLPsim/man/bayescan.Rd
AFLPsim/man/plot.hybridsim.Rd
AFLPsim/man/hybridsim.Rd
AFLPsim/man/AFLPsim-package.Rd
AFLPsim/man/sim2arlequin.Rd
AFLPsim/man/sim2popgene.Rd
AFLPsim/man/hybridize.Rd
AFLPsim/man/sim2newhybrids.Rd
AFLPsim/man/demosimhybrid.Rd
AFLPsim/man/hybridindex.Rd
AFLPsim/man/sim2bayescan.Rd
AFLPsim/man/sim2genind.Rd
AFLPsim/man/gscan.Rd
AFLPsim/man/sim2structure.Rd