| AFLPsim-package | Hybrid Simulation and Genome Scan for Dominant Markers |
| bayescan | Identifying candidate loci under natural selection with... |
| demosimhybrid | Demographic model of introgressive hybridization |
| gscan | Genome scan for hybrids |
| hybridindex | Estimate hybrid index por 'hybridsim' objects |
| hybridize | AFLP simulator with selection from parental data |
| hybridsim | AFLP simulator with selection |
| plot.demosimhybrid | Plotting 'demosimhybrid' objects |
| plot.hybridsim | Plotting hybridsim objects |
| sim2arlequin | Converting hybridsim object to a Arlequin input file |
| sim2bayescan | Converting hybridsim object to a Bayescan input file |
| sim2genind | Converting a hybridsim object to a genind object |
| sim2introgress | Converting hybridsim object to introgress |
| sim2newhybrids | Converting hybridsim object to a NewHybrids input file |
| sim2popgene | Converting hybridsim object to a PopGene input file |
| sim2structure | Convert a hybridsim object to a STRUCTURE input file |
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