Files in AHMbook

Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2

R/spline-prep_AHM1_10-14_Prepare_input_spline.R R/simOccSpatial_AHM2_9.R R/simDM_AHM2_2-5-5_DailMadsen_model.R R/simHDSg_AHM1_9-2-1_Simulate_hierarch_distance_sampling_groups.R R/simDynocc_AHM2_3_Simulate_dynamic_occupancy.R R/plot-Nmix-resi&map-Nmix-resi_AHM1_6-9-3_plotting.R R/simMultMix_AHM2_2.7.1.R R/simNmixSpatial_AHM2_9.R R/simFn_AHM1_1-1_Simulate_Poisson_process.R R/simExpCorrRF.R R/simDataDK1_21--.R R/simSpatialDSline_AHM2_11-5.R R/simSpatialDSte.R R/simDCM.R R/simOcc_AHM1_10-5_Simulate_static_occupancy.R R/simDSM.R R/tryPlotError.R R/simHDSpoint.R R/fitstats_assessment_of_fit.R R/wigglyOcc_AHM1_10-14_Simulate_occupancy_wiggly_covars.R R/simOccCat.R R/simIssj.sim.R R/simPPe_AHM2_10.R R/zinit.R R/image_scale.R R/simComm_AHM1_11-2_Simulate_community_data.R R/simDataDK_AHM2_10.R R/simHDStr.R R/simCJS_AHM2_3-2-2.R R/simPdata_AHM1_8-2-5-1_Simulate_point_transect_data.R R/data-fn_AHM1_4.3_Simulate_binomial_mixture_model.R R/simPOP_AHM2_1-7-1.R R/ppc-plot_AHM1_6-8_plot_posterior_predictive_check.R R/simPH_AHM2_1-8-1.R R/bigCrossCorr.R R/simHDS_AHM1_8-5-1_Simulate_hierarch_distance_sampling.R R/simFrogDisease.R R/simDM0_AHM2_2-5-1_simpleDailMadsen_model.R R/helper_histCount.R R/simPleNmix_AHM1_6-12_Simulate_Nmixture_data.R R/checkNamespace.R R/simNmix_AHM1_6-5_Simulate_binom-multinom_mixtures.R R/standardize.R R/sim3Occ_AHM1_10-10_Simulate_static_3level_occupancy.R R/simDynoccSpatial_AHM2_9.R R/piFun_customised_AHM1_7-7.R R/e2dist.R R/simIDS.R R/modSelFP.R R/simSpatialHDS.R R/simDemoDynocc_AHM2_4.R R/graphSSM_AHM2_1-6.R R/ch2marray_AHM2_3-4-1.R R/simLdata_AHM1_8-2-3_Simulate_line_transect_data.R R/color_ramps.R R/getLVcorrMat_AHM2_8--.R R/draw_circle.R R/valid_data.R R/simNpC_AHM2_1-2-2.R R/stopifnot.R R/simSpatialDS_AHM1_9-8-3_Simulate_spatial_DS.R R/simHDSopen.R R/simOccttd_AHM1_10-12-1_Simulate_timeToDetection_occupancy.R R/playRN_AHM1_6-13-1_Simulate_Royle-Nichols_model.R inst/RandomFieldsSupport/simExpCorrRF.R inst/RandomFieldsSupport/simPPe.R inst/RandomFieldsSupport/simDynoccSpatial.R man/zinit.Rd man/simNpC.Rd man/data_UKmarbledWhite.Rd man/data_FrenchPeregrines.Rd man/graphSSM.Rd man/data_simDynoccSpatialData.Rd man/simOcc.Rd man/simPH.Rd man/data_SwissSquirrels.Rd man/data_ttdPeregrine.Rd man/simFrogDisease.Rd man/simDCM.Rd man/simIDS.Rd man/simHDSpoint.Rd man/simOccSpatial.Rd man/data_treeSparrow.Rd man/data_SwissAtlasHa.Rd man/simHDSg.Rd man/simNmix.Rd man/sim3Occ.Rd man/simDynoccSpatial.Rd man/data_Finnmark.Rd man/data_SwissEagleOwls.Rd man/spline.prep.Rd man/simPdata.Rd man/bigCrossCorr.Rd man/color_ramps.Rd man/data_HubbardBrook.Rd man/simPOP.Rd man/e2dist.Rd man/simMultMix.Rd man/simDSM.Rd man/data_crossbillAHM.Rd man/simSpatialDS.Rd man/simExpCorrRF.Rd man/map.Nmix.resi.Rd man/data_cswa.Rd man/simPPe.Rd man/simOccttd.Rd man/simNmixSpatial.Rd man/valid_data.Rd man/data_crestedTit.Rd man/data_wigglyLine.Rd man/data_MHB2014.Rd man/piFuns.Rd man/data_EurasianLynx.Rd man/ch2marray.Rd man/data_greenWoodpecker.Rd man/ppc.plot.Rd man/data_BerneseOberland.Rd man/simComm.Rd man/data_dragonflies.Rd man/simHDSopen.Rd man/simHDS.Rd man/simDM_simDM0.Rd man/data_willowWarbler.Rd man/simSpatialDSline.Rd man/standardize.Rd man/simFn.Rd man/plot_Nmix_resi.Rd man/simDynocc.Rd man/data_MesoCarnivores.Rd man/image_scale.Rd man/data_SwissMarbledWhite.Rd man/simLdata.Rd man/fitstats.Rd man/data_waterVoles.Rd man/data_wagtail.Rd man/AHMbook-package.Rd man/data_duskySalamanders.Rd man/data_SwissTits.Rd man/playRN.Rd man/simWigglyOcc.Rd man/simHDStr.Rd man/simIssj.sim.Rd man/modSelFP.Rd man/simData.fn.Rd man/getLVcorrMat.Rd man/simSpatialDSte.Rd man/data_spottedWoodpecker.Rd man/simSpatialHDS.Rd man/simDemoDynocc.Rd man/simCJS.Rd man/simpleNmix.Rd man/simDataDK.Rd