An R6Class of AIPW for estimating the average causal effects with users' inputs of exposure, outcome, covariates and related libraries for estimating the efficient influence function.
An AIPW object is constructed by
new() with users' inputs of data and causal structures, then it
fit() the data using the
k_split cross-fitting, and provides results via the
summary() methods, propensity scores and inverse probability weights by exposure status can be
If outcome is missing, analysis assumes missing at random (MAR) by estimating propensity scores of I(A=a, observed=1) with all covariates
W.g are disabled.) Missing exposure is not supported.
See examples for illustration.
AIPW$new(Y = NULL, A = NULL, W = NULL, W.Q = NULL, W.g = NULL, Q.SL.library = NULL, g.SL.library = NULL, k_split = 10, verbose = TRUE, save.sl.fit = FALSE)
||Integer||A vector of outcome (binary (0, 1) or continuous)|
||Integer||A vector of binary exposure (0 or 1)|
||Data||Covariates for both exposure and outcome models.|
||Data||Covariates for the outcome model (Q).|
||Data||Covariates for the exposure model (g).|
||SL.library||Algorithms used for the outcome model (Q).|
||SL.library||Algorithms used for the exposure model (g).|
||Integer||Number of folds for splitting (Default = 10).|
||Logical||Whether to print the result (Default = TRUE)|
||Logical||Whether to save Q.fit and g.fit (Default = FALSE)|
It can be a vector, matrix or data.frame. If and only if
W == NULL,
W would be replaced by
Machine learning algorithms from SuperLearner libraries
It ranges from 1 to number of observation-1.
If k_split=1, no cross-fitting; if k_split>=2, cross-fitting is used
k_split=10, use 9/10 of the data to estimate and the remaining 1/10 leftover to predict).
NOTE: it's recommended to use cross-fitting.
This option allows users to save the fitted sl object (libs$Q.fit & libs$g.fit) for debug use. Warning: Saving the SuperLearner fitted object may cause a substantive storage/memory use.
||Fit the data to the AIPW object||fit.AIPW|
|| Fit the data to the AIPW object stratified by ||stratified_fit.AIPW|
||Summary of the average treatment effects from AIPW||summary.AIPW_base|
||Plot the propensity scores by exposure status||plot.p_score|
||Plot the inverse probability weights using truncated propensity scores||plot.ip_weights|
||Constructor||Number of observations|
|| ||Fit the outcome model stratified by exposure status|
|| ||Components calculating average causal effects|
|| ||A list of Risk difference, risk ratio, odds ratio|
|| ||A matrix contains RD, ATT, ATC, RR and OR with their SE and 95%CI|
|| ||A density plot of propensity scores by exposure status|
|| ||A box plot of inverse probability weights|
|| ||SuperLearner libraries and their fitted objects|
||Constructor||A wrapper function for fitting SuperLearner|
||Constructor|| A wrapper function using
An indicator for whether the outcome model is fitted stratified by exposure status in the
Only when using
stratified_fit() to turn on
stratified_fit = TRUE,
summary outputs average treatment effects among the treated and the controls.
summary() methods, this list contains the propensity scores (
counterfactual predictions (
efficient influence functions (
aipw_eif0) for later average treatment effect calculations.
This plot is generated by
This plot uses truncated propensity scores stratified by exposure status (
Zhong Y, Kennedy EH, Bodnar LM, Naimi AI (2021, In Press). AIPW: An R Package for Augmented Inverse Probability Weighted Estimation of Average Causal Effects. American Journal of Epidemiology.
Robins JM, Rotnitzky A (1995). Semiparametric efficiency in multivariate regression models with missing data. Journal of the American Statistical Association.
Chernozhukov V, Chetverikov V, Demirer M, et al (2018). Double/debiased machine learning for treatment and structural parameters. The Econometrics Journal.
Kennedy EH, Sjolander A, Small DS (2015). Semiparametric causal inference in matched cohort studies. Biometrika.
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library(SuperLearner) library(ggplot2) #create an object aipw_sl <- AIPW$new(Y=rbinom(100,1,0.5), A=rbinom(100,1,0.5), W.Q=rbinom(100,1,0.5), W.g=rbinom(100,1,0.5), Q.SL.library="SL.mean",g.SL.library="SL.mean", k_split=1,verbose=FALSE) #fit the object aipw_sl$fit() # or use `aipw_sl$stratified_fit()` to estimate ATE and ATT/ATC #calculate the results aipw_sl$summary(g.bound = 0.025) #check the propensity scores by exposure status after truncation aipw_sl$plot.p_score()
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