ALA4R: Atlas of Living Australia (ALA) Data and Resources in R

The Atlas of Living Australia (ALA) provides tools to enable users of biodiversity information to find, access, combine and visualise data on Australian plants and animals; these have been made available from <http://ala.org.au/>. ALA4R provides a subset of the tools to be directly used within R. It enables the R community to directly access data and resources hosted by the ALA. Our goal is to enable outputs (e.g. observations of species) to be queried and output in a range of standard formats.

Author
Ben Raymond [aut, cre], Jeremy VanDerWal [aut], Lee Belbin [aut], Michael Sumner [ctb], Tom August [ctb], John Baumgartner [ctb]
Date of publication
2016-11-09 18:28:38
Maintainer
Ben Raymond <ben_ala@untan.gl>
License
MPL-2.0
Version
1.5.3
URLs

View on CRAN

Man pages

ALA4R
'ALA4R'
ala_cache_filename
Returns the name of the cache file associated with the given...
ala_config
Get or set configuration options that control ALA4R behaviour
ala_fields
Retrieves a list of all field names that can be used with...
ala_list
Species lists
ala_lists
Find ALA species lists
aus
Basic Australia raster for visualization A basic raster...
check_assertions
Check assertions in occurrences object
fieldguide
Generate a PDF field guide using the ALA's field guide...
image_info
Fetch information about an image, given its image ID
intersect_points
Intersect environmental or contextual layers at a given a set...
occurrence_details
Retrieve the full details of occurrence records
occurrences
Get occurrence data
occurrences_plot
Quick geographic plot of occurrence data
occurrences_s3
Summarize, filter and subset occurrence data
search_fulltext
Full text search
search_guids
Lookup of species identifiers
search_layers
Search for environmental and contextual data layers
search_names
Lookup of taxonomic names
search_partial_name
Partial-name search
sites_by_species
Sites by species
species_info
Fetch a taxon profile given a scientific name or LSID (GUID)
specieslist
Get list of taxa and their occurrence counts
taxinfo_download
Download taxonomic data

Files in this package

ALA4R
ALA4R/inst
ALA4R/inst/doc
ALA4R/inst/doc/ALA4R.html
ALA4R/inst/doc/ALA4R.R
ALA4R/inst/doc/ALA4R.Rmd
ALA4R/tests
ALA4R/tests/testthat.R
ALA4R/tests/testthat
ALA4R/tests/testthat/test-search-guids.R
ALA4R/tests/testthat/test-utilities.R
ALA4R/tests/testthat/test-variable-renaming.R
ALA4R/tests/testthat/test-fieldguide.R
ALA4R/tests/testthat/test-fields.R
ALA4R/tests/testthat/test-occurrence-details.R
ALA4R/tests/testthat/test-taxinfo.R
ALA4R/tests/testthat/test-imageinfo.R
ALA4R/tests/testthat/test-sites_by_species.R
ALA4R/tests/testthat/test-lists.R
ALA4R/tests/testthat/test-checkwkt.R
ALA4R/tests/testthat/test-specieslist.R
ALA4R/tests/testthat/test-assertions.R
ALA4R/tests/testthat/test-search.R
ALA4R/tests/testthat/test-intersect.R
ALA4R/tests/testthat/test-occurrences.R
ALA4R/tests/testthat/test-species.R
ALA4R/NAMESPACE
ALA4R/NEWS.md
ALA4R/data
ALA4R/data/aus.RData
ALA4R/R
ALA4R/R/utilities_internal.R
ALA4R/R/onload.R
ALA4R/R/occurrences_s3.R
ALA4R/R/fieldguide.R
ALA4R/R/ala_lists.R
ALA4R/R/search_guids.R
ALA4R/R/aus.R
ALA4R/R/cached_get.R
ALA4R/R/ala_cache_filename.R
ALA4R/R/check_status_code.R
ALA4R/R/occurrence_details.R
ALA4R/R/search_partial_name.R
ALA4R/R/ala_config.R
ALA4R/R/ala_fields.R
ALA4R/R/ALA4R.R
ALA4R/R/cached_post.R
ALA4R/R/image_info.R
ALA4R/R/check_fq.R
ALA4R/R/species_info.R
ALA4R/R/check_assertions.R
ALA4R/R/occurrences.R
ALA4R/R/taxinfo_download.R
ALA4R/R/check_wkt.R
ALA4R/R/occurrences_plot.R
ALA4R/R/search_names.R
ALA4R/R/search_layers.R
ALA4R/R/intersect_points.R
ALA4R/R/download_to_file.R
ALA4R/R/search_fulltext.R
ALA4R/R/specieslist.R
ALA4R/R/sites_by_species.R
ALA4R/vignettes
ALA4R/vignettes/vignette_morialta_shape.RData
ALA4R/vignettes/images
ALA4R/vignettes/images/figure-05.png
ALA4R/vignettes/images/figure-02.png
ALA4R/vignettes/images/figure-01.png
ALA4R/vignettes/images/figure-03.png
ALA4R/vignettes/images/figure-04.png
ALA4R/vignettes/images/figure-06.png
ALA4R/vignettes/images/figure-00.png
ALA4R/vignettes/vignette_fabaceae.RData
ALA4R/vignettes/old.html
ALA4R/vignettes/ALA4R.Rmd
ALA4R/vignettes/old.pdf
ALA4R/vignettes/ALA4R.html.asis
ALA4R/README.md
ALA4R/MD5
ALA4R/build
ALA4R/build/vignette.rds
ALA4R/DESCRIPTION
ALA4R/man
ALA4R/man/ala_config.Rd
ALA4R/man/search_layers.Rd
ALA4R/man/search_fulltext.Rd
ALA4R/man/image_info.Rd
ALA4R/man/specieslist.Rd
ALA4R/man/ala_fields.Rd
ALA4R/man/occurrences_s3.Rd
ALA4R/man/aus.Rd
ALA4R/man/intersect_points.Rd
ALA4R/man/ALA4R.Rd
ALA4R/man/species_info.Rd
ALA4R/man/search_partial_name.Rd
ALA4R/man/ala_list.Rd
ALA4R/man/ala_lists.Rd
ALA4R/man/taxinfo_download.Rd
ALA4R/man/occurrences_plot.Rd
ALA4R/man/check_assertions.Rd
ALA4R/man/fieldguide.Rd
ALA4R/man/search_names.Rd
ALA4R/man/occurrences.Rd
ALA4R/man/search_guids.Rd
ALA4R/man/occurrence_details.Rd
ALA4R/man/sites_by_species.Rd
ALA4R/man/ala_cache_filename.Rd