get_pheno_pair: get_pheno_pair

In ALLSPICER: ALLelic Spectrum of Pleiotropy Informed Correlated Effects

get_pheno_pair

Description

simulation function: simulate true phenotype values of a pair of phenotypes

Usage

get_pheno_pair(b, X, r)

Arguments

b	true effect size matrix of variants on the two phenotypes
X	genotype matrix
r	phenotypic correlation between the two phenotypes

Value

A 2x'n_ind' matrix of phenotype information (first row corresponds to the first phenotype, second row corresponds to the second phenotype)

Examples

AC <- get_ac_mat(n_var=100)
X <- get_geno_mat(AC, n_ind=10000)
b <- get_true_beta(n_var=100, c=0.6, pi=0.5, sigma=1, null=TRUE)
Y <- get_pheno_pair(b=b, X=X, r=0.5)

ALLSPICER documentation built on Oct. 17, 2024, 1:06 a.m.