AMAP.Seq: Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Version 1.0

An Approximated Most Average Powerful Test with Optimal FDR Control with Application to RNA-seq Data

Browse man pages Browse package API and functions Browse package files

AuthorYaqing Si
Date of publication2012-06-19 14:55:47
MaintainerYaqing Si <siyaqing@gmail.com>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("AMAP.Seq")

Man pages

AMAP.Seq.Internal: Internal functions/data for AMAP.Seq package
MGN.EM: Estimate the mixture gamma-normal (MGN) distribution using...
RNASeq.Data: Standardize the data from RNA-seq experiment
test.AMAP: Calculate the test statistics of the AMAP tests

Functions

EXP.part.nbinom Man page Source code
EXP.part.poisson Man page Source code
EXP.step Man page Source code
LogSum Man page Source code
MAX.step Man page Source code
MGN.EM Man page Source code
Norm.GMedian Man page Source code
RNASeq.Data Man page Source code
RNASeq.Data.Gene Man page Source code
counts Man page
decom.initial Man page Source code
del.true Man page
dispersion.nb.QL Man page Source code
dispersion.nb.shrink Man page Source code
dist.CvM2D Man page Source code
est.mu.nb.mle Man page Source code
est.v.nb.QL Man page Source code
initial.uv Man page Source code
int.nbinom.prior Man page Source code
map-package Man page
nb.lglk Man page Source code
pdf2cdf Man page Source code
pdf2grid Man page Source code
posterior.uv Man page Source code
posterior.uv.one Man page Source code
prior.est Man page Source code
prior.grid Man page Source code
test.AMAP Man page Source code
test.amap.as Man page Source code
test.amap.gene Man page Source code

Files

MD5
R
R/test-amap.r
R/data.r
R/prior-est.r
R/prior-MGN.r
R/post-prob.r
NAMESPACE
data
data/SimuHapMap.RData
DESCRIPTION
man
man/MGN.EM.Rd
man/test.AMAP.Rd
man/RNASeq.Data.Rd
man/AMAP.Seq.Internal.Rd
AMAP.Seq documentation built on May 19, 2017, 6:39 p.m.