We provide tools to estimate two prediction performance metrics, the average positive predictive values (AP) as well as the well-known AUC (the area under the receiver operator characteristic curve) for risk scores or marker. The outcome of interest is either binary or censored event time. Note that for censored event time, our functions estimate the AP and the AUC are time-dependent for pre-specified time interval(s). A function that compares the APs of two risk scores/markers is also included. Optional outputs include positive predictive values and true positive fractions at the specified marker cut-off values, and a plot of the time-dependent AP versus time (available for event time data).

Author | Hengrui Cai <hengruicai@gmail.com>, Yan Yuan <yyuan@ualberta.ca>, Qian Michelle Zhou <qz70@msstate.edu>, Bingying Li<dorisli1120@gmail.com> |

Date of publication | 2016-08-05 22:49:06 |

Maintainer | Hengrui Cai <hengruicai@gmail.com> |

License | LGPL-3 |

Version | 3.0 |

**APBinary:** Estimating the AP and the AUC for Binary Outcome Data.

**APSurv:** Estimating the Time-dependent AP and AUC for Censored Time to...

**APtools:** Functions to estimate Average Positive Predictive Values (AP)...

**CompareAP:** Comparison of two risk scores based on the differences and...

**mayo:** Mayo Marker data

APtools

APtools/NAMESPACE

APtools/data

APtools/data/mayo.RData

APtools/R

APtools/R/sum.I.R
APtools/R/APBinary.R
APtools/R/APtools.R
APtools/R/APSurv.R
APtools/R/CompareAP.R
APtools/MD5

APtools/DESCRIPTION

APtools/man

APtools/man/CompareAP.Rd
APtools/man/APtools.Rd
APtools/man/APSurv.Rd
APtools/man/APBinary.Rd
APtools/man/mayo.Rd
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