Man pages for ATNr
Run Allometric Trophic Networks Models
| create_Lmatrix | Make L matrix |
| create_matrix_parameter | Make parameter matrix |
| create_model_Scaled | Initialize an ATN model, following Delmas et al. 2017,... |
| create_model_Unscaled | Initialize an ATN model, following Binzer et al. 2016, Global... |
| create_model_Unscaled_nuts | Initialize an ATN model, following Schneider et al. 2016,... |
| create_niche_model | Create a food web based on the niche model |
| dot-filter_extinct | Filter Extinct Species |
| dot-remove_Scaled | Internal function to remove species from a Scaled model |
| dot-remove_Unscaled | Internal function to remove species from a Unscaled model |
| dot-remove_Unscaled_nuts | Internal function to remove species from a Unscaled_nuts... |
| initialise_default_Scaled | Default parameters for the scaled version of ATN as in Delmas... |
| initialise_default_Unscaled | Default parameters for the scaled version of ATN as in Binzer... |
| initialise_default_Unscaled_nuts | Default model parameters as in Schneider et al. 2016 |
| is_connected | Detect whether a food web is composed of several disconnected... |
| jacobian | Estimate the Jacobian matrix of a ODE system |
| lsoda_wrapper | Wrapper for lsoda |
| plot_odeweb | Plot food web dynamics |
| remove_species | Function to remove species from a model class |
| run_checks | Run checks on model parameters |
| Scaled | Store parameters and functions associated to the scaled... |
| Scaled_loops | Store parameters and functions associated to the scaled... |
| schneider | Default parameters as in Schneider et al. (2016) |
| sort_input | Sort custom input |
| TroLev | Calculate trophic level of species |
| Unscaled | Store parameters and functions associated to the unscaled... |
| Unscaled_loops | Store parameters and functions associated to the unscaled... |
| Unscaled_nuts | Store parameters and functions associated to the unscaled... |
| Unscaled_nuts_loops | Store parameters and functions associated to the unscaled... |
