Ab_palette: Ab_palette: color ranges adapted to the BCR/TCR gene...

In AbSolution: Interactive Feature-Based Analysis of AIRR-Seq Data

Ab_palette: color ranges adapted to the BCR/TCR gene structure

Description

#' @description **Internal function.** Not intended for direct use. Exported only for 'shinymeta' report rendering via '::' access. Use [run_app()] instead. Returns a vector of colors according to the input. For V/D/J/VJ/VDJ inputs, the colors are produced in a way that genes and combination of genes from the same family are assigned a similar color.

Usage

Ab_palette(
  list_values,
  vect_genes_comb = NA,
  type_values = c("V", "D", "J", "VJ", "VDJ", "cuantitative", "cualitative"),
  colorblind = FALSE,
  seed = 1234
)

Arguments

list_values	For V(D)J combinations, a list of lists of the families of each segment and the genes within them. For V/D/J segments, a list of the families and the genes within them. For cuantitative or cualitative values, a list of values.
vect_genes_comb	The vector of the V(D)J combinations present in the dataset if type_values is 'VJ' or 'VDJ'. Otherwise, NA.
type_values	One of 'V','D','J','VJ','VDJ', 'cuantitative' or 'cualitative'. 'V','D','J','VJ','VDJ',
colorblind	If TRUE, the output is a colorblind-friendly vector of colors from the viridis package. The similarity of the V-D-J colors is lost.

Value

palette_colors: a (named) vector of colors

Examples

  # Internal function exported for shinymeta :: access during report rendering.
  # Requires a live Shiny reactive context and real AIRR-seq data.
  # Use run_app() as the user-facing entry point.

AbSolution documentation built on April 27, 2026, 9:07 a.m.