print.AlphaPart: Print method for the output of AlphaPart function.

In AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information

Print method for the output of AlphaPart function.

Description

Partitioning of breeding values if often performed on quite large datasets, which quickly fills in the whole screen. Print method therefore prints out paths, number of individuals and the first and the last few lines for each trait to quickly see what kind of data is in x.

Usage

## S3 method for class 'AlphaPart'
print(x, n, ...)

Arguments

x	AlphaPart, output object from AlphaPart function.
n	Integer, number of the first and last rows in x to print out using head and tail.
...	Arguments passed to print function.

See Also

AlphaPart, head, tail.

Examples

## Small pedigree with additive genetic (=breeding) values
ped <- data.frame(  id=c(  1,   2,   3,   4,   5,   6),
                   fid=c(  0,   0,   2,   0,   4,   0),
                   mid=c(  0,   0,   1,   0,   3,   3),
                   loc=c("A", "B", "A", "B", "A", "A"),
                   gen=c(  1,   1,   2,   2,   3,   3),
                  trt1=c(100, 120, 115, 130, 125, 125),
                  trt2=c(100, 110, 105, 100,  85, 110))

## Partition additive genetic values
tmp <- AlphaPart(x=ped, colBV=c("trt1", "trt2"))
print(tmp)

## Summarize by generation (genetic mean)
summary(tmp, by="gen")

## Summarize by generation (genetic variance)
summary(tmp, by="gen", FUN = var)



## There are also two demos
  demo(topic="AlphaPart_deterministic", package="AlphaPart",
       ask=interactive())
  demo(topic="AlphaPart_stochastic",     package="AlphaPart",
       ask=interactive())

AlphaPart documentation built on Nov. 16, 2022, 1:09 a.m.