AmyloGram: Prediction of Amyloid Proteins

Predicts amyloid proteins using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

AuthorMichal Burdukiewicz [cre, aut], Piotr Sobczyk [ctb], Stefan Roediger [ctb]
Date of publication2016-09-24 13:40:09
MaintainerMichal Burdukiewicz <michalburdukiewicz@gmail.com>
LicenseGPL-3
Version1.0
https://github.com/michbur/AmyloGram

View on CRAN

Files

AmyloGram
AmyloGram/inst
AmyloGram/inst/CITATION
AmyloGram/inst/AmyloGram
AmyloGram/inst/AmyloGram/ui.R
AmyloGram/inst/AmyloGram/server.R
AmyloGram/inst/AmyloGram/readme.md
AmyloGram/inst/AmyloGram/www
AmyloGram/inst/AmyloGram/www/shiny_paper.css
AmyloGram/inst/AmyloGram/prots.txt
AmyloGram/inst/AmyloGram/AmyloGram_logo.png
AmyloGram/NAMESPACE
AmyloGram/data
AmyloGram/data/pep424.rda
AmyloGram/data/spec_sens.rda
AmyloGram/data/AmyloGram_model.rda
AmyloGram/R
AmyloGram/R/utils.R AmyloGram/R/predict.R AmyloGram/R/read_txt.R AmyloGram/R/AmyloGram_gui.R AmyloGram/R/print.R AmyloGram/R/is_protein.R AmyloGram/R/datasets.R AmyloGram/R/AmyloGram-package.R
AmyloGram/README.md
AmyloGram/MD5
AmyloGram/DESCRIPTION
AmyloGram/man
AmyloGram/man/predict.ag_model.Rd AmyloGram/man/pep424.Rd AmyloGram/man/AmyloGram_gui.Rd AmyloGram/man/AmyloGram-package.Rd AmyloGram/man/is_protein.Rd AmyloGram/man/AmyloGram_model.Rd AmyloGram/man/read_txt.Rd AmyloGram/man/print.ag_model.Rd AmyloGram/man/spec_sens.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.