Man pages for ArchaeoPhases
Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'
| allen_analyze | Analyze composite relations |
| allen_basic_relation_set | The basic Allen relation set |
| allen_basic_relation_strings | Allen basic relation set as strings |
| allen_composition | Composition of two Allen relations |
| allen_concurrent_relations | Allen concurrent relation set |
| allen_create_concurrent_vector | Create a result vector identifying concurrent relations |
| allen_create_distinct_endpoint_vector | Create a result vector for relations with distinct endpoints |
| allen_create_result_vector | Create a named result vector |
| allen_ensure_set_vector | Ensure an Allen set is represented as a vector of single... |
| allen_illustrate | Illustrate basic and composite relations |
| allen_is_result_vector | Test whether an object is a result vector |
| allen_is_set_string | Test if an object is a set string |
| allen_is_set_vector | Test if an object is a set vector |
| allen_joint_concurrency | Joint concurrence of two or more observed intervals |
| allen_lattice_x | Nokel lattice x coordinates |
| allen_lattice_y | Nokel lattice y coordinates |
| allen_observe | Observe the relation between two phases, each representing an... |
| allen_observe_frequency | Observed frequency of an Allen set |
| allen_plot | Make a single plot of a Nökel lattice. |
| allen_proportion_result | Calculate the proportion of each relation in a result vector |
| allen_relate_intervals | Relate two or more observed intervals |
| allen_relation | Allen relation of two definite intervals |
| allen_set_to_vector | Convert an Allen relation set to a named vector |
| allen_six_value_set | Allen relation set for intervals with distinct endpoints. |
| allen_string_to_set | Convert a string containing Allen relation codes to a... |
| allen_string_to_vector | Convert a string containing Allen relation codes to a result... |
| allen_union | Union of two Allen relation sets. |
| allen_update_result | Update a result vector |
| analyze_allen_relations | Data for an analytic graphic |
| app_ArchaeoPhases | Run ArchaeoPhases shiny apps |
| ArchaeoPhases | ArchaeoPhases: Post-Processing of the Markov Chain Simulated... |
| coda.mcmc | Create an 'mcmc.list' object for 'coda' users |
| composition_lookup_table | Construct an Allen composition lookup table |
| CreateMinMaxGroup | Construct the minimum and maximum for a group of events... |
| credible_interval | Bayesian credible interval |
| CredibleInterval | Bayesian credible interval |
| dates_hiatus | Test for the existence of a hiatus between two MCMC chains. |
| DatesHiatus | Test for the existence of a hiatus between two parameters |
| estimate_range | Estimate ranges from two or more calibrations |
| Events | Events |
| illustrate_allen_relations | Data for an illustrative graphic |
| ImportCSV | Importing a CSV file |
| ImportCSV.BCal | Importing a BCal csv file |
| marginal_plot | Plot a marginal posterior density |
| MarginalPlot | Plot a marginal posterior density |
| MarginalProba | Bayesian test for anteriority / posteriority between two... |
| marginal_statistics | Marginal summary statistics |
| MarginalStatistics | Marginal summary statistics |
| multi_credible_interval | Bayesian credible interval for a series of dates |
| MultiCredibleInterval | Bayesian credible interval for a series of dates |
| multi_dates_plot | Plot of credible intervals or HPD regions of a series of... |
| MultiDatesPlot | Plot of credible intervals or HPD regions of a series of... |
| multi_hpd | Bayesian HPD regions for a series of MCMC chains |
| MultiHPD | Bayesian HPD regions for a series of MCMC chains |
| multi_marginal_plot | Marginal posterior densities of several events |
| MultiMarginalPlot | Marginal posterior densities of several events |
| multi_marginal_statistics | Marginal summary statistics for multiple MCMC chains |
| MultiPhasePlot | Several phase density plots |
| MultiPhasesGap | Gap or hiatus between a succession of groups (for groups in... |
| MultiPhasesTransition | Transition range for a succession of groups (for groups in... |
| MultiPhaseTimeRange | Phase time range for multiple groups |
| MultiSuccessionPlot | Successive Phases Density Plots (for phases in temporal order... |
| new_archaeophases_mcmc | Constructor for 'archaeophases_mcmc' object |
| new_archaeophases_plot | Constructor for 'archaeophases_plot' object |
| occurrence_plot | Plot occurrences |
| OccurrencePlot | Plot occurrences |
| original_file | Check for an original mcmc file |
| original_file.archaeophases_mcmc | Check for an original mcmc file |
| original_file.archaeophases_plot | Check for an original 'archaeophases_plot' file |
| PhaseDurationPlot | Plot the duration of a group |
| PhasePlot | Plot the characteristics of a group of events |
| Phases | Phases |
| phases_gap | Gap or hiatus between two successive phases (for phases in... |
| PhasesGap | Gap or hiatus between two successive phases (for phases in... |
| phase_statistics | Summary statistics of a phase |
| PhaseStatistics | Summary statistics of a phase |
| PhasesTransition | Transition range between two successive phases (for phases in... |
| PhaseTimeRange | Phase time range |
| plot.archaeophases_plot | Recreate a graphical plot |
| read_bcal | Read MCMC output from BCal |
| read_chronomodel | Read MCMC output from ChronoModel |
| read_oxcal | Read MCMC output from OxCal |
| reproduce | Reproduce an MCMC data frame |
| reproduce.archaeophases_mcmc | Reproduce an MCMC data frame |
| reproduce.archaeophases_plot | Reproduce an ArchaeoPhases plot |
| SuccessionPlot | Density plots of two successive groups (for groups in... |
| tempo_activity_plot | Plot the derivative of the tempo plot Bayesian estimate |
| TempoActivityPlot | Plot the derivative of the tempo plot Bayesian estimate |
| tempo_plot | Tempo plot |
| TempoPlot | Tempo plot |
