Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'

allen_analyze | Analyze composite relations |

allen_basic_relation_set | The basic Allen relation set |

allen_basic_relation_strings | Allen basic relation set as strings |

allen_composition | Composition of two Allen relations |

allen_concurrent_relations | Allen concurrent relation set |

allen_create_concurrent_vector | Create a result vector identifying concurrent relations |

allen_create_distinct_endpoint_vector | Create a result vector for relations with distinct endpoints |

allen_create_result_vector | Create a named result vector |

allen_ensure_set_vector | Ensure an Allen set is represented as a vector of single... |

allen_illustrate | Illustrate basic and composite relations |

allen_is_result_vector | Test whether an object is a result vector |

allen_is_set_string | Test if an object is a set string |

allen_is_set_vector | Test if an object is a set vector |

allen_joint_concurrency | Joint concurrence of two or more observed intervals |

allen_lattice_x | Nokel lattice x coordinates |

allen_lattice_y | Nokel lattice y coordinates |

allen_observe | Observe the relation between two phases, each representing an... |

allen_observe_frequency | Observed frequency of an Allen set |

allen_plot | Make a single plot of a Nökel lattice. |

allen_proportion_result | Calculate the proportion of each relation in a result vector |

allen_relate_intervals | Relate two or more observed intervals |

allen_relation | Allen relation of two definite intervals |

allen_set_to_vector | Convert an Allen relation set to a named vector |

allen_six_value_set | Allen relation set for intervals with distinct endpoints. |

allen_string_to_set | Convert a string containing Allen relation codes to a... |

allen_string_to_vector | Convert a string containing Allen relation codes to a result... |

allen_union | Union of two Allen relation sets. |

allen_update_result | Update a result vector |

analyze_allen_relations | Data for an analytic graphic |

app_ArchaeoPhases | Run ArchaeoPhases shiny apps |

ArchaeoPhases | ArchaeoPhases: Post-Processing of the Markov Chain Simulated... |

coda.mcmc | Create an 'mcmc.list' object for 'coda' users |

composition_lookup_table | Construct an Allen composition lookup table |

CreateMinMaxGroup | Construct the minimum and maximum for a group of events... |

credible_interval | Bayesian credible interval |

CredibleInterval | Bayesian credible interval |

dates_hiatus | Test for the existence of a hiatus between two MCMC chains. |

DatesHiatus | Test for the existence of a hiatus between two parameters |

estimate_range | Estimate ranges from two or more calibrations |

Events | Events |

illustrate_allen_relations | Data for an illustrative graphic |

ImportCSV | Importing a CSV file |

ImportCSV.BCal | Importing a BCal csv file |

marginal_plot | Plot a marginal posterior density |

MarginalPlot | Plot a marginal posterior density |

MarginalProba | Bayesian test for anteriority / posteriority between two... |

marginal_statistics | Marginal summary statistics |

MarginalStatistics | Marginal summary statistics |

multi_credible_interval | Bayesian credible interval for a series of dates |

MultiCredibleInterval | Bayesian credible interval for a series of dates |

multi_dates_plot | Plot of credible intervals or HPD regions of a series of... |

MultiDatesPlot | Plot of credible intervals or HPD regions of a series of... |

multi_hpd | Bayesian HPD regions for a series of MCMC chains |

MultiHPD | Bayesian HPD regions for a series of MCMC chains |

multi_marginal_plot | Marginal posterior densities of several events |

MultiMarginalPlot | Marginal posterior densities of several events |

multi_marginal_statistics | Marginal summary statistics for multiple MCMC chains |

MultiPhasePlot | Several phase density plots |

MultiPhasesGap | Gap or hiatus between a succession of groups (for groups in... |

MultiPhasesTransition | Transition range for a succession of groups (for groups in... |

MultiPhaseTimeRange | Phase time range for multiple groups |

MultiSuccessionPlot | Successive Phases Density Plots (for phases in temporal order... |

new_archaeophases_mcmc | Constructor for 'archaeophases_mcmc' object |

new_archaeophases_plot | Constructor for 'archaeophases_plot' object |

occurrence_plot | Plot occurrences |

OccurrencePlot | Plot occurrences |

original_file | Check for an original mcmc file |

original_file.archaeophases_mcmc | Check for an original mcmc file |

original_file.archaeophases_plot | Check for an original 'archaeophases_plot' file |

PhaseDurationPlot | Plot the duration of a group |

PhasePlot | Plot the characteristics of a group of events |

Phases | Phases |

phases_gap | Gap or hiatus between two successive phases (for phases in... |

PhasesGap | Gap or hiatus between two successive phases (for phases in... |

phase_statistics | Summary statistics of a phase |

PhaseStatistics | Summary statistics of a phase |

PhasesTransition | Transition range between two successive phases (for phases in... |

PhaseTimeRange | Phase time range |

plot.archaeophases_plot | Recreate a graphical plot |

read_bcal | Read MCMC output from BCal |

read_chronomodel | Read MCMC output from ChronoModel |

read_oxcal | Read MCMC output from OxCal |

reproduce | Reproduce an MCMC data frame |

reproduce.archaeophases_mcmc | Reproduce an MCMC data frame |

reproduce.archaeophases_plot | Reproduce an ArchaeoPhases plot |

SuccessionPlot | Density plots of two successive groups (for groups in... |

tempo_activity_plot | Plot the derivative of the tempo plot Bayesian estimate |

TempoActivityPlot | Plot the derivative of the tempo plot Bayesian estimate |

tempo_plot | Tempo plot |

TempoPlot | Tempo plot |

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