Man pages for ArchaeoPhases
Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'

allen_analyzeAnalyze composite relations
allen_basic_relation_setThe basic Allen relation set
allen_basic_relation_stringsAllen basic relation set as strings
allen_compositionComposition of two Allen relations
allen_concurrent_relationsAllen concurrent relation set
allen_create_concurrent_vectorCreate a result vector identifying concurrent relations
allen_create_distinct_endpoint_vectorCreate a result vector for relations with distinct endpoints
allen_create_result_vectorCreate a named result vector
allen_ensure_set_vectorEnsure an Allen set is represented as a vector of single...
allen_illustrateIllustrate basic and composite relations
allen_is_result_vectorTest whether an object is a result vector
allen_is_set_stringTest if an object is a set string
allen_is_set_vectorTest if an object is a set vector
allen_joint_concurrencyJoint concurrence of two or more observed intervals
allen_lattice_xNokel lattice x coordinates
allen_lattice_yNokel lattice y coordinates
allen_observeObserve the relation between two phases, each representing an...
allen_observe_frequencyObserved frequency of an Allen set
allen_plotMake a single plot of a Nökel lattice.
allen_proportion_resultCalculate the proportion of each relation in a result vector
allen_relate_intervalsRelate two or more observed intervals
allen_relationAllen relation of two definite intervals
allen_set_to_vectorConvert an Allen relation set to a named vector
allen_six_value_setAllen relation set for intervals with distinct endpoints.
allen_string_to_setConvert a string containing Allen relation codes to a...
allen_string_to_vectorConvert a string containing Allen relation codes to a result...
allen_unionUnion of two Allen relation sets.
allen_update_resultUpdate a result vector
analyze_allen_relationsData for an analytic graphic
app_ArchaeoPhasesRun ArchaeoPhases shiny apps
ArchaeoPhasesArchaeoPhases: Post-Processing of the Markov Chain Simulated...
coda.mcmcCreate an 'mcmc.list' object for 'coda' users
composition_lookup_tableConstruct an Allen composition lookup table
CreateMinMaxGroupConstruct the minimum and maximum for a group of events...
credible_intervalBayesian credible interval
CredibleIntervalBayesian credible interval
dates_hiatusTest for the existence of a hiatus between two MCMC chains.
DatesHiatusTest for the existence of a hiatus between two parameters
estimate_rangeEstimate ranges from two or more calibrations
EventsEvents
illustrate_allen_relationsData for an illustrative graphic
ImportCSVImporting a CSV file
ImportCSV.BCalImporting a BCal csv file
marginal_plotPlot a marginal posterior density
MarginalPlotPlot a marginal posterior density
MarginalProbaBayesian test for anteriority / posteriority between two...
marginal_statisticsMarginal summary statistics
MarginalStatisticsMarginal summary statistics
multi_credible_intervalBayesian credible interval for a series of dates
MultiCredibleIntervalBayesian credible interval for a series of dates
multi_dates_plotPlot of credible intervals or HPD regions of a series of...
MultiDatesPlotPlot of credible intervals or HPD regions of a series of...
multi_hpdBayesian HPD regions for a series of MCMC chains
MultiHPDBayesian HPD regions for a series of MCMC chains
multi_marginal_plotMarginal posterior densities of several events
MultiMarginalPlotMarginal posterior densities of several events
multi_marginal_statisticsMarginal summary statistics for multiple MCMC chains
MultiPhasePlotSeveral phase density plots
MultiPhasesGapGap or hiatus between a succession of groups (for groups in...
MultiPhasesTransitionTransition range for a succession of groups (for groups in...
MultiPhaseTimeRangePhase time range for multiple groups
MultiSuccessionPlotSuccessive Phases Density Plots (for phases in temporal order...
new_archaeophases_mcmcConstructor for 'archaeophases_mcmc' object
new_archaeophases_plotConstructor for 'archaeophases_plot' object
occurrence_plotPlot occurrences
OccurrencePlotPlot occurrences
original_fileCheck for an original mcmc file
original_file.archaeophases_mcmcCheck for an original mcmc file
original_file.archaeophases_plotCheck for an original 'archaeophases_plot' file
PhaseDurationPlotPlot the duration of a group
PhasePlotPlot the characteristics of a group of events
PhasesPhases
phases_gapGap or hiatus between two successive phases (for phases in...
PhasesGapGap or hiatus between two successive phases (for phases in...
phase_statisticsSummary statistics of a phase
PhaseStatisticsSummary statistics of a phase
PhasesTransitionTransition range between two successive phases (for phases in...
PhaseTimeRangePhase time range
plot.archaeophases_plotRecreate a graphical plot
read_bcalRead MCMC output from BCal
read_chronomodelRead MCMC output from ChronoModel
read_oxcalRead MCMC output from OxCal
reproduceReproduce an MCMC data frame
reproduce.archaeophases_mcmcReproduce an MCMC data frame
reproduce.archaeophases_plotReproduce an ArchaeoPhases plot
SuccessionPlotDensity plots of two successive groups (for groups in...
tempo_activity_plotPlot the derivative of the tempo plot Bayesian estimate
TempoActivityPlotPlot the derivative of the tempo plot Bayesian estimate
tempo_plotTempo plot
TempoPlotTempo plot
ArchaeoPhases documentation built on March 18, 2022, 5:44 p.m.