BACA: Bubble Chart to Compare Biological Annotations by using DAVID

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R-based graphical tool to concisely visualise and compare biological annotations queried from the DAVID web service. It provides R functions to perform enrichment analysis (via DAVID - http://david.abcc.ncifcrf.gov) on several gene lists at once, and then visualizing all the results in one generated figure that allows R users to compare the annotations found for each list.

Author
Vittorio Fortino and Dario Greco
Date of publication
2015-05-27 08:55:17
Maintainer
Vittorio Fortino <vittorio.fortino@ttl.fi>
License
GPL (>= 2)
Version
1.3

View on CRAN

Man pages

BACA-package
A graphical tool to visualize and compare functional...
BBplot
To compare enriched functional annotations found by using...
DAVIDsearch
Get functional annotation charts of gene lists using DAVID.
gene.lists.ex
Eight gene lists
Jplot
To compute and visualize Jaccard similarity score between two...
result.kegg
David search results

Files in this package

BACA
BACA/inst
BACA/inst/CITATION
BACA/inst/NEWS
BACA/inst/doc
BACA/inst/doc/BACA.html
BACA/inst/doc/BACA.pdf
BACA/inst/doc/figure
BACA/inst/doc/figure/unnamed-chunk-12-1.png
BACA/inst/doc/figure/unnamed-chunk-9-1.png
BACA/inst/doc/BACA.md
BACA/NAMESPACE
BACA/data
BACA/data/gene.lists.ex.rda
BACA/data/result.kegg.rda
BACA/R
BACA/R/bbplots.R
BACA/MD5
BACA/build
BACA/build/vignette.rds
BACA/DESCRIPTION
BACA/man
BACA/man/BACA-package.Rd
BACA/man/gene.lists.ex.Rd
BACA/man/result.kegg.Rd
BACA/man/DAVIDsearch.Rd
BACA/man/BBplot.Rd
BACA/man/Jplot.Rd