install.packages("igraph")
install.packages("randomForest")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biostrings")
mRNA - Directory of an FASTA file containing mRNA sequences. lncRNA - Directory of an FASTA file containing lncRNA sequences. sncRNA - Directory of an FASTA file containing lncRNA sequences, this parameter is optional. trainingResult - The result of the training, (three or two matrices) save_dataframe - Boolean. This parameter saves a .csv file with the features in the current directory. No file is created by default. save_model - Boolean. This parameter saves a .rds file with the model in the current directory. No file is created by default.
Defining parameters:
mRNA <- system.file("extdata", "mRNA.fasta", package = "BASiNETEntropy")
lncRNA <- system.file("extdata", "ncRNA.fasta", package = "BASiNETEntropy")
library(BASiNETEntropy)
result <- classify(mRNA=mRNA, lncRNA=lncRNA)
Example of generated entropy curves:
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