| abundance | Abundance |
| beqi2 | Perform BEQI-2 Analysis |
| BEQI2dir | Create BEQI-2 Directory Structure |
| BEQI2-pkg | Marine Benthic Ecosystem Quality Index |
| entropy | Shannon's Entropy |
| eqr | Ecological Quality Ratio (EQR) |
| genusToSpecies | Genus to Species Conversion |
| grapes-inInterval-grapes | Test if a Value is in an Interval |
| harmonize | Harmonize Case |
| isAzoic | Test for Azoic Samples |
| margalef | Margalef Index of Diversity |
| pool | Pooling |
| readAMBI | Read AMBI Sensitivity Data |
| readBEQI | Read BEQI input files |
| readERF | Read Ecotopes References File |
| readFIBI | Read Freshwater Inflow Biotic Index File |
| readITI | Read Infaunal Trophic Index File |
| readSettings | Read BEQI Settings File |
| readTWN | Read TWN Data |
| rename | Renaming Taxon Names |
| speciesRichness | Species Richness |
| stripSpaces | Remove Redundant Spaces |
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