dot-com2links.og: Convert Pedigree Matrices to Related Pairs File (Legacy)

In BGmisc: An R Package for Extended Behavior Genetics Analysis

Convert Pedigree Matrices to Related Pairs File (Legacy)

Description

This legacy function converts pedigree matrices into a related pairs file.

Usage

.com2links.og(
  rel_pairs_file = "dataRelatedPairs.csv",
  ad_ped_matrix = NULL,
  mit_ped_matrix = mt_ped_matrix,
  mt_ped_matrix = NULL,
  cn_ped_matrix = NULL,
  update_rate = 500,
  verbose = FALSE,
  outcome_name = "data",
  ...
)

Arguments

rel_pairs_file	File path to write related pairs to (CSV format).
ad_ped_matrix	Matrix of additive genetic relatedness coefficients.
mit_ped_matrix	Matrix of mitochondrial relatedness coefficients. Alias: mt_ped_matrix.
mt_ped_matrix	Matrix of mitochondrial relatedness coefficients.
cn_ped_matrix	Matrix of common nuclear relatedness coefficients.
update_rate	Numeric. Frequency (in iterations) at which progress messages are printed.
verbose	Logical. If TRUE, prints progress messages.
outcome_name	Character string representing the outcome name (used in file naming).
...	Additional arguments to be passed to com2links

BGmisc documentation built on June 11, 2025, 1:07 a.m.