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BIGpopA: Pedigree Validation Genetic Composition of Diploids & Polyploids
Tools for pedigree quality control and genomic breed/line composition estimation in diploid and polyploid breeding populations. 'BIGpopA' provides functions to check and correct common pedigree errors, assign parentage from SNP genotype data using Mendelian error rates, validate parent-offspring trios, and estimate genome-wide breed or line composition using quadratic programming. Supports both diploid and polyploid species. For more details about the included 'breedTools' functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
Getting started
Browse package contents
Package details |
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| Author | Josue Chinchilla-Vargas [cre, aut], Alexander Sandercock [aut], University of Florida [cph] (Breeding Insight) |
| Maintainer | Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu> |
| License | Apache License (>= 2) |
| Version | 1.0.6 |
| URL | https://CRAN.R-project.org/package=BIGpopA https://github.com/Breeding-Insight/BIGpopA |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the BIGpopA package in your browser
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