BIOM.utils: Utilities for the BIOM (Biological Observation Matrix) Format

Provides utilities to facilitate import, export and computation with the BIOM (Biological Observation Matrix) format (http://biom-format.org).

Install the latest version of this package by entering the following in R:
install.packages("BIOM.utils")
AuthorDaniel T. Braithwaite [aut, cre]
Date of publication2014-08-29 01:18:59
MaintainerDaniel T. Braithwaite <contact.dtb@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version0.9
https://github.com/braithwaite/BIOM.utils/

View on CRAN

Functions

applyBiomMethods Man page
as.character.biom Man page
as.list.biom Man page
as.matrix.biom Man page
biom Man page
biom.character Man page
biom_fields Man page
biom_format Man page
biom_format_url Man page
biom.list Man page
biom.matrix Man page
biom_matrix_element_types Man page
biom_matrix_types Man page
biom_table_types Man page
buildBiomExamples Man page
dense2sparse Man page
dim.biom Man page
dimnames.biom Man page
dmat Man page
exampleBiomFile Man page
head.biom Man page
jtxt Man page
li1 Man page
li2 Man page
li3 Man page
li4 Man page
matrix2list Man page
metadata Man page
metadata.biom Man page
print.biom Man page
print.biomsummary Man page
smat Man page
sparse2dense Man page
str.biom Man page
summary.biom Man page
tail.biom Man page

Files

inst
inst/extdata
inst/extdata/example-json.txt
tests
tests/tests.R
NAMESPACE
data
data/examples.rda
data/data.rda
R
R/sysdata.rda
R/source.R
README.md
MD5
DESCRIPTION
man
man/BIOMexamples.Rd man/SimpleMatrixReshaping.Rd man/BIOMdimensions.Rd man/BIOMto.Rd man/BIOMdisplay.Rd man/BIOMfrom.Rd man/BIOMconstants.Rd
LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.