BIOM.utils: Utilities for the BIOM (Biological Observation Matrix) Format
Version 0.9

Provides utilities to facilitate import, export and computation with the BIOM (Biological Observation Matrix) format (http://biom-format.org).

AuthorDaniel T. Braithwaite [aut, cre]
Date of publication2014-08-29 01:18:59
MaintainerDaniel T. Braithwaite <contact.dtb@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version0.9
URL https://github.com/braithwaite/BIOM.utils/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BIOM.utils")

Getting started

README.md

Popular man pages

BIOMconstants: Constants related to BIOM format
BIOMdimensions: Row and column information of BIOM data
BIOMdisplay: Display BIOM data in full or part
BIOMexamples: BIOM examples and related utilities
BIOMfrom: Convert BIOM data from formal to basic type (export)
BIOMto: Attach formal type to BIOM data (import)
SimpleMatrixReshaping: Convert matrix data between dense, sparse, and list...
See all...

All man pages Function index File listing

Man pages

BIOMconstants: Constants related to BIOM format
BIOMdimensions: Row and column information of BIOM data
BIOMdisplay: Display BIOM data in full or part
BIOMexamples: BIOM examples and related utilities
BIOMfrom: Convert BIOM data from formal to basic type (export)
BIOMto: Attach formal type to BIOM data (import)
SimpleMatrixReshaping: Convert matrix data between dense, sparse, and list...

Functions

applyBiomMethods Man page Source code
as.character.biom Man page Source code
as.list.biom Man page Source code
as.matrix.biom Man page Source code
biom Man page Source code
biom.character Man page Source code
biom.list Man page Source code
biom.matrix Man page Source code
biom_fields Man page
biom_format Man page
biom_format_url Man page
biom_matrix_element_types Man page
biom_matrix_types Man page
biom_table_types Man page
buildBiomExamples Man page Source code
collapse Source code
dense2sparse Man page Source code
dim.biom Man page Source code
dimnames.biom Man page Source code
dmat Man page
exampleBiomFile Man page Source code
head.biom Man page Source code
jtxt Man page
li1 Man page
li2 Man page
li3 Man page
li4 Man page
matrix2list Man page Source code
metadata Man page Source code
metadata.biom Man page Source code
onAttach Source code
print.biom Man page Source code
print.biomsummary Man page Source code
smat Man page
sparse2dense Man page Source code
str.biom Man page Source code
summary.biom Man page Source code
tail.biom Man page Source code
warning Source code

Files

inst
inst/extdata
inst/extdata/example-json.txt
tests
tests/tests.R
NAMESPACE
data
data/examples.rda
data/data.rda
R
R/sysdata.rda
R/source.R
README.md
MD5
DESCRIPTION
man
man/BIOMexamples.Rd
man/SimpleMatrixReshaping.Rd
man/BIOMdimensions.Rd
man/BIOMto.Rd
man/BIOMdisplay.Rd
man/BIOMfrom.Rd
man/BIOMconstants.Rd
LICENSE
BIOM.utils documentation built on May 19, 2017, 7:32 a.m.

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